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. 2023 May 6;26(6):106829. doi: 10.1016/j.isci.2023.106829
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Mouse anti-ACSA-2-APC Miltenyi Biotec Cat#130-116-142; RRID: AB_2727422
Rat anti-CD11b-BV421 BD Cat#562605; RRID: AB_11152949
Mouse anti-O4-PE Miltenyi Biotec Cat#130-117-357; RRID: AB_2733886
Rabbit anti-IBA1 WAKO Cat#019–19741; RRID:AB_839504

Chemicals, peptides, and recombinant proteins

Actinomycin D Sigma-Aldrich Cat#A1410-5 MG
Lipofectamine 2000 Thermo Fisher Scientific Cat#11668019

Critical commercial assays

miRVana Paris Kit Life Technologies Cat#AM1556
miRNeasy Micro Kit Qiagen Cat#217084
miRCURY LNA RT Kit Qiagen Cat#339340
Superscript II reverse transcriptase Thermo Fisher Scientific Cat#18064071
Neuron Isolation Kit, mouse Miltenyi Biotec Cat#130-115-390
Adult Brain Dissociation Kit, mouse and rat Miltenyi Biotec Cat#130-107-677
ChromiumSingleCell3 v3 10X Genomics Version 3, CG000183
ChromiumNextGEMSingleCell3 10X Genomics Version 3.1, CG000204

Deposited data

Single-cell RNA sequencing (FASTQ and metadata) Gene Expression Omnibus, NCBI GEO: GSE230333

Experimental models: Cell lines

Human induced pluripotent cell line (iPSC) Sigma-Aldrich Cat#IPSC0028

Experimental models: Organisms/strains

C57BL/6 (C57BL/6JRj) The Jackson Laboratory RRID:IMSR_JAX:000664
Thy1-YFP-16 mice (B6.Cg-Tg(Thy1-YFP)16Jrs/J) The Jackson Laboratory RRID:IMSR_JAX:003709

Oligonucleotides

miR-132 antagomiR (locked nucleic acid (LNA)-, 3′-cholesterol-modified oligonucleotide) Qiagen Cat# 500150; Design ID: 280412
Scramble LNA antagomiR control Qiagen Cat# 500150; Design ID: 280407
miR-132 miRIDIAN mimic; UAAC
AGUCUACAGCCAUGGUCG (MIMAT0000426)
Dharmacon Cat# C-300599-06
Control miRIDIAN mimic; UCACA
ACCUCCUAGAAAGAGUAGA (MIMAT0000039)
Dharmacon Cat# CN-001000-01
Primer mmu-miR-132-3p; UAA
CAGUCUACAGCCAUGGUCG
Qiagen Cat# 204129
Primer mmu-miR-212-3p; UAAC
AGUCUCCAGUCACGGCCA
Qiagen Cat# 206022
mRNA primers (for full sequence, see Table S6) IDT Custom primer sets

Software and algorithms

FIJI Schindelin et al.166 https://fiji.sc/
Encori Li et al.62 https://starbase.sysu.edu.cn/
Magma De Leeuw et al.165 https://ctg.cncr.nl/software/magma
Palantir Setty et al.103 https://github.com/dpeerlab/Palantir
David Huang et al.64 https://david.ncifcrf.gov/
Seurat Butler et al.163 Version 4.1.1, https://satijalab.org/seurat/
Scanpy Wolf et al.159 Version 1.8.1
https://scanpy.readthedocs.io/en/stable/
Spectronaut Biognosys Spectronaut 14