Table 3.
Candidate genes for the detected pod size SNPs.
| Trait | SNP | Pos | Gene | start | end | Annotated function |
|---|---|---|---|---|---|---|
| PL | Pv_0285901 | 344060 | Phvul.004G005400 | 315927 | 317696 | cytochrome P450, family 96, subfamily A, polypeptide 10 |
| Phvul.004G005700 | 368531 | 370087 | cytochrome P450, family 96, subfamily A, polypeptide 10 | |||
| Phvul.004G005800 | 372078 | 374079 | cytochrome P450, family 96, subfamily A, polypeptide 10 | |||
| Phvul.004G005900 | 380970 | 382499 | cytochrome P450, family 96, subfamily A, polypeptide 10 | |||
| Phvul.004G006000 | 386618 | 394940 | cytochrome P450, family 96, subfamily A, polypeptide 10 | |||
| Phvul.004G006050 | 394161 | 395837 | cytochrome P450, family 96, subfamily A, polypeptide 10 | |||
| Phvul.004G006100 | 401756 | 403445 | cytochrome P450, family 96, subfamily A, polypeptide 10 | |||
| Phvul.004G006300 | 431954 | 433623 | cytochrome P450, family 96, subfamily A, polypeptide 1 | |||
| Pv_0445220 | 25626390 | Phvul.005G091200 | 25636647 | 25640316 | galacturonosyltransferase 12 | |
| Pv_1016502 | 1129181 | Phvul.011G015300 | 1205296 | 1211056 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | |
| PT | Pv_0684832 | 8785254 | Phvul.008G088100 | 8689853 | 8700154 | HEAT repeat; WD domain, G-beta repeat protein protein |
| Pv_0685388 | 9098191 | Phvul.008G090300 | 9078509 | 9081654 | WRKY DNA-binding protein 33 | |
| PW | Pv_0008234 | 5648221 | Phvul.001G052100 | 5695145 | 5699567 | cytochrome P450, family 71, subfamily B, polypeptide 35 |
| Pv_0193604 | 43687336 | Phvul.002G265400 | 43645971 | 43647134 | WRKY DNA-binding protein 51 | |
| Phvul.002G266400 | 43771606 | 43773653 | WRKY DNA-binding protein 13 | |||
| Pv_0272703 | 32138995 | Phvul.003G128800 | 32230627 | 32238415 | auxin response factor 19 | |
| Pv_0303974 | 13113489 | Phvul.004G076200 | 13119224 | 13119583 | cytochrome P450, family 72, subfamily A, polypeptide 15 | |
| Pv_0366735 | 46263029 | Phvul.004G159300 | 46348261 | 46352994 | cytochrome P450, family 71, subfamily B, polypeptide 34 | |
| Phvul.004G159500 | 46359615 | 46361846 | cytochrome P450, family 71, subfamily B, polypeptide 34 | |||
| Pv_0368967 | 47052667 | Phvul.004G166000 | 46991847 | 46995082 | RHO-related protein from plants 9 | |
| SPW | Pv_0223474 | 11173316 | Phvul.003G072200 | 11117010 | 11145109 | aminophospholipid ATPase 3 |
| Pv_0237496 | 16882167 | Phvul.003G085400 | 16950726 | 16952504 | cytochrome P450, family 71, subfamily B, polypeptide 34 | |
| Pv_0527678 | 26312586 | Phvul.006G157800 | 26263616 | 26264925 | Adenosylmethionine decarboxylase family protein | |
| Phvul.006G159300 | 26336534 | 26342306 | histidine-containing phosphotransmitter 1 | |||
| Pv_0686810 | 9704115 | Phvul.008G094800 | 9681839 | 9684032 | myb-like HTH transcriptional regulator family protein | |
| Pv_0961930 | 28382540 | Phvul.010G075500 | 28283209 | 28293553 | myb domain protein 1 |
SNP, single nucleotide polymorphism; PL, pod length; PT, pod thickness; PW, pod width; SPW, single pod weight.