Table 1. Genome data for Bugulina stolonifera, tzBugStol2.1.
| Project accession data | |
|---|---|
| Assembly identifier | tzBugStol2.1 |
| Species | Bugulina stolonifera |
| Specimen | tzBugStol2 |
| NCBI taxonomy ID | 192920 |
| BioProject | PRJEB51034 |
| BioSample ID | SAMEA7536683 |
| Isolate information | modular colony |
| Assembly metrics * | |
| Consensus quality (QV) | 55.5 (Benchmark: ≥50) |
| k-mer completeness | 99.99% (Benchmark: ≥95%) |
| BUSCO ** | C:84.1%[S:83.1%,D:0.9%],F:7.0%,M:8.
9%,n:954 (Benchmark: C ≥ 95%) |
| Percentage of
assembly mapped to chromosomes |
99.85% (Benchmark: ≥95%) |
| Organelles | Mitochondrial genome assembled
(Benchmark: complete single alleles) |
| Raw data accessions | |
| PacificBiosciences
SEQUEL II |
ERR8978458 |
| 10X Genomics Illumina | ERR8702816–ERR8702819 |
| Hi-C Illumina | ERR8702820, ERR8702821 |
| PolyA RNA-Seq Illumina | ERR10123683 |
| Genome assembly | |
| Assembly accession | GCA_935421135.1 |
|
Accession of alternate
haplotype |
GCA_935421085.1 |
| Span (Mb) | 235.0 |
| Number of contigs | 60 |
| Contig N50 length (Mb) | 12.6 |
| Number of scaffolds | 30 |
| Scaffold N50 length
(Mb) |
20.3 |
| Longest scaffold (Mb) | 36.8 |
* Assembly metric benchmarks are adapted from column VGP-2020 of “Table 1: Proposed standards and metrics for defining genome assembly quality” from ( Rhie et al., 2021).
** BUSCO scores based on the metazoa_odb10 BUSCO set using 5.3.2. C = complete [S = single copy, D = duplicated], F = fragmented, M = missing, n = number of orthologues in comparison. A full set of BUSCO scores is available at https://blobtoolkit.genomehubs.org/view/tzBugStol2.1/dataset/CAKXYU01/busco.