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. 2023 Apr 1;26(5):106555. doi: 10.1016/j.isci.2023.106555
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

ZBTB16 (PLZF) (D8G3G) Rabbit mAb Cell Signaling Technology #39784
Anti-rabbit IgG, HRP-linked Cell Signaling Technology #7074
Glucocorticoid Receptor (D6H2L) XP® Rabbit mAb Cell Signaling Technology #12041

Biological samples

Human pancreatic islets from healthy donors and donors with T2D Nordic Network for Clinical Islet Transplantation, Human Tissue Laboratory, EXODIAB/LUDC (http://www.nordicislets.org). N/A

Chemicals, peptides, and recombinant proteins

Dexamethasone Sigma-Aldrich #D1756
ZBTB16 TaqMan® gene expression assay Thermo Fisher Hs00232313_m1
GR TaqMan® gene expression assay Thermo Fisher Hs00353740_m1
SGK1 TaqMan® gene expression assay Thermo Fisher Hs00353740_m1
PDX-1 TaqMan® gene expression assay Thermo Fisher Hs00236830_m1
INS TaqMan® gene expression assay Thermo Fisher Hs02741908_m1
4–15% Mini-PROTEAN® TGX Stain-Free™ Protein Gels Bio-Rad #4568084
Clarity Western ECL Substrate Bio-Rad #1705061
GelRed® Nucleic Acid Stain Sigma-Aldrich #SCT123
Lipofectamine LTX Thermo Fisher #15338-100
Lipofectamine™ RNAiMAX Transfection Reagent Thermo Fisher #13778075
3-Isobutyl-1-methylxanthine (IBMX) Sigma-Aldrich #I5879
Dimethyl sulfoxide (DMSO) Sigma-Aldrich #34869
Sodium pyruvate Sigma-Aldrich #P2256
Oligomycin A Sigma-Aldrich #75351
Carbonyl cyanide 4-(trifluoromethoxy)phenylhydrazone (FCCP) Sigma-Aldrich #C2920
Rotenone Sigma-Aldrich #R8875

Critical commercial assays

miRNeasy isolation kit Qiagen #217084
TruSeq Stranded Total RNA Library Prep with Ribo-Zero kit Illumina #RS-122-2201
High-Capacity cDNA Reverse Transcription Kit Thermo Fisher #4368814
Nextseq 500/550 High Output kit v2 Illumina #FC-404-2002
Pierce™ BCA Protein Assay Kit Thermo Fisher #23225
ChIP-IT® Express Enzymatic kit Active Motif #53009
Insulin ELISA (Human) Mercodia #10-1113-01
CellTiter 96® AQueous One Solution Cell Proliferation Assay Promega #G3582

Deposited data

Raw and processed RNA sequencing data from human islet and EndoC-βH1 cells upon dexamethasone treatment This paper GEO: GSE225901

Experimental models: Cell lines

EndoC-βΗ1 Ravassard et al.88 RRID:CVCL_L909

Oligonucleotides

Primers for GR binding sites on ZBTB16 gene, see Table S7 This paper N/A
ZBTB16 Silencer Select Pre-Designed siRNA Thermo Fisher n341241; #4390771
Silencer Select Negative Control No. 2 siRNA Thermo Fisher #AM4613

Recombinant DNA

ZBTB16_OHu04229C_pcDNA3.1(+)-C-HA GeneScript #SC1200

Software and algorithms

Adobe Illustrator (23.0.1) Adobe https://www.adobe.com/products/illustrator.html, RRID:SCR_010279
FastQC (0.11.8) Andrews et al.89 RRID:SCR_014583
Salmon (0.14.0) Patro at al.90 RRID:SCR_017036
Deseq2 (1.30) Love et al.91 RRID:SCR_015687
GraphPad Prism 9 http://www.graphpad.com/ RRID:SCR_002798
WebGestaltR (0.4.4) Liao et al.92 RRID:SCR_006786
Image Lab Software (6.1) https://www.bio-rad.com/en-se/product/image-lab-software?ID=KRE6P5E8Z RRID:SCR_014210