Antibodies |
|
ZBTB16 (PLZF) (D8G3G) Rabbit mAb |
Cell Signaling Technology |
#39784 |
Anti-rabbit IgG, HRP-linked |
Cell Signaling Technology |
#7074 |
Glucocorticoid Receptor (D6H2L) XP® Rabbit mAb |
Cell Signaling Technology |
#12041 |
|
Biological samples |
|
Human pancreatic islets from healthy donors and donors with T2D |
Nordic Network for Clinical Islet Transplantation, Human Tissue Laboratory, EXODIAB/LUDC (http://www.nordicislets.org). |
N/A |
|
Chemicals, peptides, and recombinant proteins |
|
Dexamethasone |
Sigma-Aldrich |
#D1756 |
ZBTB16 TaqMan® gene expression assay |
Thermo Fisher |
Hs00232313_m1 |
GR TaqMan® gene expression assay |
Thermo Fisher |
Hs00353740_m1 |
SGK1 TaqMan® gene expression assay |
Thermo Fisher |
Hs00353740_m1 |
PDX-1 TaqMan® gene expression assay |
Thermo Fisher |
Hs00236830_m1 |
INS TaqMan® gene expression assay |
Thermo Fisher |
Hs02741908_m1 |
4–15% Mini-PROTEAN® TGX Stain-Free™ Protein Gels |
Bio-Rad |
#4568084 |
Clarity Western ECL Substrate |
Bio-Rad |
#1705061 |
GelRed® Nucleic Acid Stain |
Sigma-Aldrich |
#SCT123 |
Lipofectamine LTX |
Thermo Fisher |
#15338-100 |
Lipofectamine™ RNAiMAX Transfection Reagent |
Thermo Fisher |
#13778075 |
3-Isobutyl-1-methylxanthine (IBMX) |
Sigma-Aldrich |
#I5879 |
Dimethyl sulfoxide (DMSO) |
Sigma-Aldrich |
#34869 |
Sodium pyruvate |
Sigma-Aldrich |
#P2256 |
Oligomycin A |
Sigma-Aldrich |
#75351 |
Carbonyl cyanide 4-(trifluoromethoxy)phenylhydrazone (FCCP) |
Sigma-Aldrich |
#C2920 |
Rotenone |
Sigma-Aldrich |
#R8875 |
|
Critical commercial assays |
|
miRNeasy isolation kit |
Qiagen |
#217084 |
TruSeq Stranded Total RNA Library Prep with Ribo-Zero kit |
Illumina |
#RS-122-2201 |
High-Capacity cDNA Reverse Transcription Kit |
Thermo Fisher |
#4368814 |
Nextseq 500/550 High Output kit v2 |
Illumina |
#FC-404-2002 |
Pierce™ BCA Protein Assay Kit |
Thermo Fisher |
#23225 |
ChIP-IT® Express Enzymatic kit |
Active Motif |
#53009 |
Insulin ELISA (Human) |
Mercodia |
#10-1113-01 |
CellTiter 96® AQueous One Solution Cell Proliferation Assay |
Promega |
#G3582 |
|
Deposited data |
|
Raw and processed RNA sequencing data from human islet and EndoC-βH1 cells upon dexamethasone treatment |
This paper |
GEO: GSE225901
|
|
Experimental models: Cell lines |
|
EndoC-βΗ1 |
Ravassard et al.88
|
RRID:CVCL_L909 |
|
Oligonucleotides |
|
Primers for GR binding sites on ZBTB16 gene, see Table S7
|
This paper |
N/A |
ZBTB16 Silencer Select Pre-Designed siRNA |
Thermo Fisher |
n341241; #4390771 |
Silencer Select Negative Control No. 2 siRNA |
Thermo Fisher |
#AM4613 |
|
Recombinant DNA |
|
ZBTB16_OHu04229C_pcDNA3.1(+)-C-HA |
GeneScript |
#SC1200 |
|
Software and algorithms |
|
Adobe Illustrator (23.0.1) |
Adobe |
https://www.adobe.com/products/illustrator.html, RRID:SCR_010279 |
FastQC (0.11.8) |
Andrews et al.89
|
RRID:SCR_014583 |
Salmon (0.14.0) |
Patro at al.90
|
RRID:SCR_017036 |
Deseq2 (1.30) |
Love et al.91
|
RRID:SCR_015687 |
GraphPad Prism 9 |
http://www.graphpad.com/ |
RRID:SCR_002798 |
WebGestaltR (0.4.4) |
Liao et al.92
|
RRID:SCR_006786 |
Image Lab Software (6.1) |
https://www.bio-rad.com/en-se/product/image-lab-software?ID=KRE6P5E8Z |
RRID:SCR_014210 |