Figure 2.

Visual summary of the rPodLil1.2 assembly. (A) Hi-C contact map of the genome assembly visualized in PretextView. The map shows 20 superscaffolds, ordered from longest to shortest, corresponding to the 18 autosomes and the two sex chromosomes (Z and W); the latter can be better visualized in Supplementary Fig. S5. Additionally, there are a total of 44 short unlocalized scaffolds within the main chromosomes, and 2,084 short unplaced scaffolds (not visible at the resolution shown). (B) Snailplot summarising assembly metrics, including scaffold statistics, BUSCO completeness, total size and base composition. The main plot is divided into 1,000 size-ordered bins around the circumference with each bin representing 0.1% of the 1.460.085.851 bp assembly. The distribution of record lengths is shown in dark grey with the plot radius scaled to the longest record present in the assembly (137 Mb, shown in red). Orange and pale-orange arcs show the N50 and N90 record lengths (90 Mb and 45 Mb), respectively. The pale grey spiral shows the cumulative record count on a log scale with white scale lines showing successive orders of magnitude. The blue and pale-blue area around the outside of the plot shows the distribution of GC, AT and N percentages in the same bins as the inner plot. A summary of complete, fragmented, duplicated and missing BUSCO genes in the vertebrata_odb10 set is shown in the top right.