Table 3.

Top 30 common upregulated genes in the lung tissues of MG-infected chicken embryos and newly hatched chicks.

Gene Name	Chicken Embryos CG vs. MG		Newly Hatched Chicks CG vs. MG
	Log2 FC	p Value-Adj	Log2 FC	p Value-Adj
LOC770026	7.871279	5.93 × 10−7	5.628906	9.02 × 10−5
IL4I1	8.292192	9.01 × 10−24	4.34217	0.001511
IL8L2	8.973782	4.22 × 10−10	2.677474	0.000107
AVD	8.112968	1.10 × 10−229	3.530443	0.001406
CXCL13	4.050071	2.39 × 10−4	7.463658	4.76 × 10−5
IL8L1	6.075514	5.63 × 10−5	4.837175	0.01823
CXCL13L2	5.491891	1.62 × 10−41	5.034946	0.000766
CLEC5A	6.426947	1.13 × 10−5	3.781138	0.000599
DCSTAMP	5.106985	8.03 × 10−11	4.602756	3.74 × 10−7
CD72L1	5.84905	7.68 × 10−14	3.81117	1.56 × 10−5
MLKL	6.022089	2.49 × 10−10	3.513237	0.002472
CD72	4.639555	5.09 × 10−3	4.272585	4.67 × 10−7
MRGPRH	4.359756	4.33 × 10−73	4.054451	0.010629
S100A9	4.645942	2.61 × 10−76	3.256855	0.001827
LOC419276	4.625564	3.41 × 10−3	2.765353	0.025887
MX1	4.17664	5.01 × 10−19	2.5511	0.00012
LOC101748032	3.504725	4.38 × 10−14	3.160072	0.001962
LPAR5	3.489633	0.023681	2.833963	0.014503
CCL5	3.601561	9.63 × 10−7	2.597259	0.018252
CYBB	3.470943	1.64 × 10−43	2.539925	0.005234