Table 6.
Distribution of significant SNP loci and candidate genes in the two RIL populations for KNR identified through GWAS.
| Mapping Population | Marker | Chromosome | Mapping Interval | p-Value | Candidate Gene |
Gene Annotation |
|---|---|---|---|---|---|---|
| pop1 | Snp-99488079 | 1 | 99,467,951–99,508,106 | 5.97 | Zm00001d030014 (dist = 63,542) | tetraspanin family protein |
| Zm00001d030015 (dist = 45,616) | - | |||||
| Snp-224368029 | 3 | 224,347,842–224,388,029 | 5.94 | Zm00001d044290 | Beta-galactosidase 1 | |
| Snp-167546055 | 7 | 167,526,037–167,566,055 | 5.68 | Zm00001d021985 | formin-like protein 13 | |
| Snp-171585347 | 7 | 171,565,347–171,605,347 | 5.32 | Zm00001d022168 (dist = 26,086) | AT hook-containing MAR binding 1-like protein [Zea mays] | |
| Zm00001d022169 (dist = 111,235) | RNA polymerase T phage-like 1 | |||||
| Snp-132258909 | 8 | 132,238,909–132,278,909 | 5.01 | Zm00001d010888 (dist = 11,763) | - | |
| Zm00001d010889 (dist = 54,452) | myb-like protein J | |||||
| both | Snp-99488079 | 1 | 99,467,951–99,508,106 | 5.4 | Zm00001d030014 (dist = 63,542) | tetraspanin family protein |
| Zm00001d030015 (dist = 45,616) | - | |||||
| Snp-230569504 | 2 | 230,549,473–230,589,504 | 5.82 | Zm00001d007391 | - | |
| Snp-226862468 | 4 | 226,842,468–226,882,476 | 5.04 | Zm00001d053342 | - | |
| Zm00001d053345 | - | |||||
| Snp-45947193 | 5 | 45,927,193–45,967,193 | 5.55 | Zm00001d014421 | Growth-regulating factor 6 | |
| Snp-167546055 | 7 | 167,526,055–167,566,055 | 5.07 | Zm00001d021985 | formin-like protein 13 |