Table 2.
Patient | Gene | Nucleotide/Amino Acid Alteration | SNP ID | Allele Frequency/Allele Count * | In Silico Prediction Tools | Inheritance | ||||
---|---|---|---|---|---|---|---|---|---|---|
ACMG Guidelines |
CADD Score | Mutation Taster | PolyPhen | SIFT | ||||||
1 | DHX37 | c.923G>A/ p.Arg308Gln |
rs1384892917 | 0.00006490 1/1 | Pathogenic | 33 | Disease causing | Probably damaging | Deleterious | Mother: WT Father: NA |
2 | DHX37 | c.1399C>G/ p.Leu467Val |
rs149331610 | 0.0002952 1/38 | VUS | 22.2 | Disease causing | Probably damaging | Deleterious | Maternal |
NR5A1 | c.288_304del/ p.(Met98Glyfs*45) |
NA | NA | - | NA | - | - | - | Paternal | |
3 | DHX37 | c.2995G>A/ p.Val999Met |
rs148710712 | 0.002316 2/54 | Likely Benign | 24.8 | Disease causing | Probably damaging | Deleterious | Paternal |
NR5A1 | c.11C>A/ p.(Ser4*) |
NA | NA | - | 37 | - | - | - | de novo | |
4 | DHX37 | c.2995G>A/ p.Val999Met |
rs148710712 | 0.002316 2/54 | Likely Benign | 24.8 | Disease causing | Probably damaging | Deleterious | NA |
NA: not available; SNP ID: single nucleotide polymorphism identification. VUS: variant of unknown significance; WT: wild type. * For this project, data from GnomAD (Genome Aggregation Database) database v2.1.1 were used based on the population with the highest allele frequency: 1 European (non-Finnish) population; 2 African/African American population.