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. 2023 May 27;13:8652. doi: 10.1038/s41598-023-35639-x

Table 2.

Relative primers used for PCR, real-time PCR, stem-loop sequences.

Name Sequences
PCR analysis (3′UTR)
 Top2A

Sense

Anti-sense

5′ CCGCTCGAGACCAAGCCCAAGACTGGTTT 3′

5′ ATAAGAATGCGGCCGCGCACATAAGAGGCTGAGTGT 3′

 MALAT1

Sense

Anti-sense

5′ CCGCTCGAGTTCAGTTGTGTGTAAGCAAGT 3′

5′ ATAAGAATGCGGCCGCAGATAATGTTCTCATCAGTAGTAAG 3′

qPCR primer
 Top2A

Sense

Anti-sense

5′ CATTGAAGACGCTTCGTTATGG 3′

5′ CAGAAGAGAGGGCCAGTTGTG 3′

 MALAT1

Sense

Anti-sense

5′ CTTCCCTAGGGGATTTCAGG 3′

5′ GCCCACAGGAACAAGTCCTA 3′

 miR-561

Sense

Anti-sense

5′ CGCTCCAAAGTTTAAGATCCTTGAAG 3′

5′ AGACTGCACCTGTCCGG 3′

 GAPDH

Sense

Anti-sense

5′ GAAAGCCTGCCGGTGACTAA 3′

5′ GCGCCCAATACGACCAAATC 3′

 U6

Sense

Anti-sense

5′ CGCAAGGATGACACGCAAATTC 3′

5′ AGACTGCACCTGTCCGG 3′

siRNA and mimic sequences
 siRAN1#MALAT1 5′-GGCUUAUACUCAUGAAUCUTT-3′
 siRAN2#MALAT1 5′-GGGCUUCUCUUAACAUUUATT-3′
 miR-561

Sense

Anti-sense

5′ CAAAGUUUAAGAUCCUUGAAGU 3′

5′ ACUUCAAGGAUCUUAAACUUUG 3′

 Negative control UUCUCCGAACGUGUCACGUTT
 miRNA inhibitor negative control CAGUACUUUUGUGUAGUACAA
 miR-561 stem-loop GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACACTTCA