Table 2.
Name | Sequences | |
---|---|---|
PCR analysis (3′UTR) | ||
Top2A |
Sense Anti-sense |
5′ CCGCTCGAGACCAAGCCCAAGACTGGTTT 3′ 5′ ATAAGAATGCGGCCGCGCACATAAGAGGCTGAGTGT 3′ |
MALAT1 |
Sense Anti-sense |
5′ CCGCTCGAGTTCAGTTGTGTGTAAGCAAGT 3′ 5′ ATAAGAATGCGGCCGCAGATAATGTTCTCATCAGTAGTAAG 3′ |
qPCR primer | ||
Top2A |
Sense Anti-sense |
5′ CATTGAAGACGCTTCGTTATGG 3′ 5′ CAGAAGAGAGGGCCAGTTGTG 3′ |
MALAT1 |
Sense Anti-sense |
5′ CTTCCCTAGGGGATTTCAGG 3′ 5′ GCCCACAGGAACAAGTCCTA 3′ |
miR-561 |
Sense Anti-sense |
5′ CGCTCCAAAGTTTAAGATCCTTGAAG 3′ 5′ AGACTGCACCTGTCCGG 3′ |
GAPDH |
Sense Anti-sense |
5′ GAAAGCCTGCCGGTGACTAA 3′ 5′ GCGCCCAATACGACCAAATC 3′ |
U6 |
Sense Anti-sense |
5′ CGCAAGGATGACACGCAAATTC 3′ 5′ AGACTGCACCTGTCCGG 3′ |
siRNA and mimic sequences | ||
siRAN1#MALAT1 | 5′-GGCUUAUACUCAUGAAUCUTT-3′ | |
siRAN2#MALAT1 | 5′-GGGCUUCUCUUAACAUUUATT-3′ | |
miR-561 |
Sense Anti-sense |
5′ CAAAGUUUAAGAUCCUUGAAGU 3′ 5′ ACUUCAAGGAUCUUAAACUUUG 3′ |
Negative control | UUCUCCGAACGUGUCACGUTT | |
miRNA inhibitor negative control | CAGUACUUUUGUGUAGUACAA | |
miR-561 stem-loop | GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACACTTCA |