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. 2023 May 15;11:1184045. doi: 10.3389/fpubh.2023.1184045

Table 2.

Example of Tredegar results with passing quality metrics.

Sample rq_1 r2_q est_genome_length est_cvg number_contigs species_prediction subspecies_prediction
2022EP-00093 35.26 31.45 5524279 81.33 74 Klebsiella_pneumoniae NA
2022EP-00091 37.09 34.98 3807676 85.89 51 Acinetobacter_baumannii NA
2022EP-00092 35.04 31.55 5398118 59.17 47 Serratia_marcescens NA
2021EP-00104 36.91 35.32 3871668 145.61 93 Acinetobacter_baumannii NA
2021EP-00106 36.7 34.64 3937667 105.59 100 Acinetobacter_baumannii NA
2022EP-00007 35.69 32.16 5313287 102.98 147 Escherichia_coli O102:H6