Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2023 May 30;5(2):lqad053. doi: 10.1093/nargab/lqad053

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© The Author(s) 2023. Published by Oxford University Press on behalf of NAR Genomics and Bioinformatics.

This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

PMC Copyright notice

Figure 2. — Multi-channel use cases. (A) A protein–chemical interaction network generated by STITCH. Left: Aspirin compound with its top ten interactors and molecular interaction channels is shown. Right: The same network in Arena3D^web format with three channels of information: ‘Experimental’, ‘Database’ and ‘Text-Mining''. Interactions are colored in green, blue and red edges respectively. The network consists of two layers, Drugs and Proteins. (B) PREGO’s Process, Organism and Environment association tables. Left: The associations of the ‘anaerobic ammonium oxidation’ process with organisms. Middle: The associations of the genus Beggiatoa with the corresponding Environments and their respective channel sources (‘Literature’ (text-mining), ‘Environmental Samples’). Right: The multilayer and multi-edge Arena3D^web simultaneous visualization of these two distinct tables maintaining the source channel information (‘Literature’ (text-mining) shown via green edges, while ‘Environmental Sample’ derived-ones shown in red).