REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
HDAC8 | ABclonal | Cat# A8865, RRID: AB_2863620 |
H3K14ac | ABclonal | Cat# A7254 |
H3K9ac | ABclonal | Cat# A7255 |
H3K27ac | Cell Signaling Technology | Cat# 8173, RRID: AB_10949503 |
H4K16ac | ABclonal | Cat# A5280, RRID: AB_2766099 |
Actin | Cell Signaling Technology | Cat# 4970, RRID: AB_2223172 |
GFP | ABclonal | Cat# AE012, RRID: AB_2770402 |
Histone H3 | Proteintech | Cat# 17168-1-AP, RRID: AB_2716755 |
Histone H4 | ABclonal | Cat# A1131, RRID: AB_2758500 |
normal rabbit IgG | Millipore | Cat# 12–370, RRID: AB_145841 |
normal mouse IgG | Millipore | Cat# 12–371, RRID: AB_145840 |
rabbit anti-mouse IgG | Abcam | Cat# ab611709 |
anti-rabbit IgG | Millipore | Cat# AP132, RRID: AB_11214051 |
Chemicals | ||
PCI34051 | MedChemExpress | Cat# HY-15224 |
Butyrate | Sigma Aldrich | Cat# 303410 |
LPS | Sigma Aldrich | Cat# L4524 |
Esbilac formula | Abbott Laboratories | N/A |
TRIzolTM Reagent | Invitrogen | Cat# 15596026 |
DMEM | Gibco | Cat# 11995065 |
Penicillin-Streptomycin | Gibco | Cat# 15140-022 |
Puromycin | Beyotime | Cat# ST551 |
Fetal Bovine Serum | Gibco | Cat# 10099-141C |
Collagenase VIII | Sigma Aldrich | Cat# C2139 |
DNA Nase I | Sigma Aldrich | Cat# DN25 |
DTT | Sangon | Cat# B645939 |
0.5M EDTA | Sangon | Cat# B540625 |
HEPES | Sangon | Cat# C0215 |
RIPA buffer | Beyotime | Cat# P0013 |
Percoll | GE Healthcare Life Sciences | Cat# 17089101 |
Critical commercial assays | ||
DNeasy PowerSoil kit | Qiagen | Cat# 12888 |
SimpleChIP® Plus Sonication | Cell Signaling Technology | Cat# 56383 |
Chromatin IP Kit | ||
Hieff UNICON qPCR SYBR | Yeasen | Cat# 11198ES08 |
Green Master Mix | ||
EvoM-MLV RT Premix | AG | Cat# AG11706 |
Deposited data | ||
RNA-seq data (Figure 3D) | This paper | GSE212694 |
RNA-seq data (Figure 4) | This paper | GSE213187 |
CUT&Tag data | This paper | GSE213190 |
Experimental models: Cell lines | ||
FHs74Int | ATCC | Cat# CCL-241, RRID: CVCL_2899 |
IEC6 | ATCC | Cat# CRL-1592, RRID: CVCL_0343 |
Experimental models | ||
Mouse: C57BL/6 | Jiesijie Laboratory | Cat# 0653 |
Software and algorithms | ||
GraphPad Prism 8 | GraphPad | RRID:SCR_002798; http://www.graphpad.com/ |
Image Lab | Bio-Rad | RRID:SCR_014210; http://www.bio-rad.com/en-us/sku/1709690-image-lab-software |
Genescloud | Personalbio | https://www.genescloud.cn |
RRHO package ImageJ | R software ImageJ | Version 1.30.0 RRID:SCR_003070; https://imagej.nih.gov/ij/ |
SPSS 19.0 | IBM | RRID:SCR_019096; https://www.ibm.com/products/spss-statistics |