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. 2023 Jan 19;73(1):005707. doi: 10.1099/ijsem.0.005707

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This is an open-access article distributed under the terms of the Creative Commons Attribution License. This article was made open access via a Publish and Read agreement between the Microbiology Society and the corresponding author’s institution.

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Fig. 2. — Examples of assemblies from species with high intraspecies genomic diversity. Intraspecies ANI vs symmetric overlap (matched region length over the total length among a pair of assemblies) of assemblies against their corresponding type assemblies from Clostridium botulinum ( C. botulinum ), Campylobacter lari ( C. lari ), Enterococcus faecium ( E. faecium ) and Listeria monocytogenes ( L. monocytogenes ). The vertical dashed line indicates the default ANI threshold, 96 %. There are many assemblies in clusters that match their corresponding type assemblies below the expected ANI threshold and/or coverage.