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. 2023 Apr 19;12:e80063. doi: 10.7554/eLife.80063

Table 2. Overview of sparse principal component analysis (sPCA) methods used.

KSS: Karlis-Saporta-Spinaki criterion. Package: R package implementation; Features: short description of the method; Choice: method of selection of the number of informative components in real data; PCs: number of informative PCs.

Method Package Authors Features Choice PCs
RSPCA pcaPP Croux et al., 2013 Robust sPCA (RSPCA), different measure of dispersion (Qn) Permutation KSS 6
SFPCA Code in publication, Supplementary Material Guo et al., 2010 Fused penalties for block correlation KSS 6
sPCA elasticnet Zou et al., 2006 Formulation of sPCA as a regression problem KSS 6
SCA SCA Chen and Rohe, 2021 Rotation of eigen vectors for approximate sparsity Permutation KSS 6