Key resources table.
|
Reagent type (species) or resource |
Designation | Source or reference | Identifiers | Additional information |
|---|---|---|---|---|
| Software, algorithm |
seqNMF | Mackevicius et al., 2019 | github.com/FeeLab/seqNMF | Sequence detection |
| Software, algorithm |
CNMF_E | Zhou et al., 2018 | github.com/zhoupc/CNMF_E | Cell extraction |
| Software, algorithm |
STAT | Gu et al., 2023 | https://github.com/shijiegu/STAT | Tracking neurons across days |
| Software, algorithm |
Chronux | Mitra and Bokil, 2007 | chronux.org/ | Spectrogram computation |
| Software, algorithm |
SAP | Tchernichovski et al., 2000 | soundanalysispro.com | Sound analysis |
| Software, algorithm |
SI | Mandelblat-Cerf and Fee, 2014 | https://doi.org/10.1371/journal.pone.0096484 | Song imitation |
| Software, algorithm |
MATLAB | MathWorks | mathworks.com/products/matlab | Programming language |
| Biological sample (Taeniopygia guttata) |
Zebra finches | MIT animal facility | Taeniopygia guttata | |
| Strain, strain background (adeno-associated virus) |
AAV9.CAG.GCaMP6f. WPRE.SV40 |
Chen et al., 2013 | Addgene viral prep # 100836-AAV9, http://n2t.net/addgene:100836, RRID:Addgene_100836 |
|
|
Commercial assay or kit |
Miniature microscope | Inscopix | https://www.inscopix.com/nvista |