Table 5.
Software Used in scRNA-seq Analysis
| Software and algorithms | Source | Identifier |
|---|---|---|
| Cell Ranger 3.0.2 | 10× Genomics | https://www.10xgenomics.com/ |
| Seurat 4.0.2 | 66 | https://satijalab.org/seurat/index.html |
| FastMNN | 67 | https://bioconductor.org/packages/release/bioc/html/scran.html |
| SingleR | 68 | https://github.com/LTLA/SingleR |
| Clustree | 69 | https://github.com/lazappi/clustree |
| REdaS | 70 | http://CRAN.R-project.org/package=REdaS |
| Complex heatmap | 71 | https://bioconductor.org/packages/ComplexHeatmap/ |
scRNA-seq, Single-cell RNA sequencing.