FIG 3.

Genome organization, sequence coverage, and gene-specific phylogenies of chemarfal virus 1 (CHMFV-1) and viruses within the subfamily Gammarhabdovirinae, genus Novirhabdovirus. Viruses are hirame rhabdovirus (H), infectious hematopoietic necrosis virus (I), Paralichthys olivaceus rhabdovirus (P), viral hemorrhagic septicemia virus (V), snakehead rhabdovirus (S), and CHMFV-1 (C) (Table S2). Arrows (A) indicate open reading frames (scale = nucleotides). Black arrows indicate canonical rhabdovirus gene ORFs in the order nucleoprotein (N), phosphoprotein (P), matrix (M), glycoprotein (G), and RNA-directed RNA polymerase (L); gray arrows indicate accessory genes, red arrows indicate novirhabdovirus NV genes; and pink arrow indicates the CHMFV-1 NVP pseudogene. Letters beneath ORFs refer to CHMFV-1. Map shows coverage of the CHMFV-1 genome. Maximum likelihood phylogenies (B) are shown for each of the canonical rhabdoviral gene ORF nucleotide sequences. Bootstrap values above branches are based on 1,000 replicates (only values ≥50% are shown). Scale bar indicates nucleotide substitutions per site. Details of viruses and sequences are given in Tables S1 and S3.