Table 1 .
The number of eQTLs identified
| Cancer | SNP source | RNA source | Sample size | P < 0.01 | FDR < 0.05 |
|---|---|---|---|---|---|
| BRCA | Blood | Normal tissue | 51 | 83 601 | 1206 |
| Normal tissue | Normal tissue | 92 | 95 274 | 3832 | |
| Normal tissue | Tumor tissue | 135 | 126 921 | 2361 | |
| Blood | Tumor tissue | 976 | 492 732 | 210 861 | |
| Tumor tissue | Tumor tissue | 1093 | 286 117 | 123 880 | |
| COAD | Blood | Normal tissue | 24 | 76 541 | 206 |
| Normal tissue | Normal tissue | 39 | 83 472 | 774 | |
| Normal tissue | Tumor tissue | 50 | 76 612 | 286 | |
| Blood | Tumor tissue | 248 | 149 898 | 9245 | |
| Tumor tissue | Tumor tissue | 285 | 156 076 | 14 614 | |
| HNSC | Blood | Normal tissue | 42 | 73 725 | 123 |
| Normal tissue | Normal tissue | 38 | 74 781 | 152 | |
| Normal tissue | Tumor tissue | 74 | 87 819 | 575 | |
| Blood | Tumor tissue | 485 | 135 550 | 14 261 | |
| Tumor tissue | Tumor tissue | 518 | 133 927 | 17 046 | |
| LIHC | Normal tissue | Normal tissue | 48 | 93 119 | 1305 |
| Normal tissue | Tumor tissue | 80 | 81 787 | 448 | |
| Blood | Tumor tissue | 304 | 157 571 | 8219 | |
| Tumor tissue | Tumor tissue | 369 | 185 761 | 24 751 | |
| LUAD | Blood | Normal tissue | 20 | 75 792 | 0 |
| Normal tissue | Normal tissue | 57 | 89 783 | 2811 | |
| Normal tissue | Tumor tissue | 175 | 118 930 | 2718 | |
| Blood | Tumor tissue | 398 | 127 974 | 11 097 | |
| Tumor tissue | Tumor tissue | 514 | 154 612 | 18 236 | |
| LUSC | Blood | Normal tissue | 29 | 80 480 | 525 |
| Normal tissue | Normal tissue | 50 | 88 379 | 1974 | |
| Normal tissue | Tumor tissue | 236 | 104 463 | 4593 | |
| Blood | Tumor tissue | 296 | 107 886 | 5737 | |
| Tumor tissue | Tumor tissue | 500 | 121 220 | 13 573 | |
| OV | Normal tissue | Tumor tissue | 59 | 83 720 | 298 |
| Blood | Tumor tissue | 235 | 124 805 | 4538 | |
| Tumor tissue | Tumor tissue | 301 | 122 106 | 26 408 | |
| PAAD | Normal tissue | Tumor tissue | 30 | 73 608 | 5 |
| Blood | Tumor tissue | 147 | 103 957 | 4397 | |
| Tumor tissue | Tumor tissue | 178 | 112 951 | 5406 | |
| PRAD | Blood | Normal tissue | 43 | 88 715 | 601 |
| Normal tissue | Normal tissue | 50 | 90 019 | 850 | |
| Normal tissue | Tumor tissue | 113 | 111 779 | 3267 | |
| Blood | Tumor tissue | 422 | 163 626 | 28 547 | |
| Tumor tissue | Tumor tissue | 494 | 189 650 | 38 982 | |
| READ | Normal tissue | Normal tissue | 10 | 52 087 | 0 |
| Blood | Tumor tissue | 86 | 87 203 | 1043 | |
| Tumor tissue | Tumor tissue | 94 | 99 735 | 1969 | |
| SKCM | Blood | Tumor tissue | 103 | 80 831 | 948 |
| Tumor tissue | Tumor tissue | 103 | 94 434 | 1636 | |
| STAD | Blood | Normal tissue | 23 | 128 906 | 22 |
| Normal tissue | Normal tissue | 33 | 206 675 | 188 | |
| Normal tissue | Tumor tissue | 86 | 114 554 | 358 | |
| Blood | Tumor tissue | 348 | 143 044 | 8428 | |
| Tumor tissue | Tumor tissue | 415 | 139 381 | 10 758 |