Table 2.
Comparison of genome assembly and annotation summary statistics of O. melanoleuca with other songbird species (J. hyemalis, F. coelebs, M. melodia, T. guttata, F. albicollis, M. vitellinus, and G. fortis). Modified from Friis et al. (2022).
| Oenanthe | Junco | Fringilla | Melospiza | Taeniopygia | Ficedula | Manacus | Geospiza | ||
|---|---|---|---|---|---|---|---|---|---|
| Genome assembly length (Gb) | 1.04 | 0.99 | 0.99 | 1.36 | 1.22 | 1.1 | 1.17 | 1.04 | |
| Genome contig N50 (kb) | 7,700 | 75 | 67 | 8,300 | 38 | 410 | 194 | 30 | |
| Genome BUSCO scores (%) |
C S D F M |
95.5 95.1 0.4 0.9 3.6 |
95.4 95.2 0.2 1.6 3.0 |
94.1 93.8 0.3 2.0 4.0 |
87.9 87.3 0.6 7.2 5.0 |
93.8 91.9 1.9 2.3 3.9 |
96.5 96 0.5 0.8 2.7 |
96.1 94.6 1.5 1 2.9 |
96.0 95.6 0.4 1.2 2.8 |
| No. of genes | 18,143 | 19,026 | 17,703 | 15,086 | 17,561 | 16,763 | 18,976 | 14,399 | |
| Mean gene length (bp) | 28,23,218 | 15,402 | 15,818 | 14,457 | 26,458 | 31,394 | 27,847 | 30,164 | |
| No. of CDS | 31,333 | 23,245 | 17,703 | 15,086 | 17,561 | 16,763 | 18,976 | 14,399 | |
| Mean CDs length (bp) | 1,682 | 1,647 | 1,679 | 1,325 | 1,677 | 1,942 | 1,929 | 1,766 | |
| No. of exons | 320,754 | 229,210 | 221,872 | 131,940 | 171,767 | 189,043 | 190,390 | 164,721 | |
| Mean exon length (bp) | 164 | 167 | 165 | 153 | 255 | 253 | 264 | 195 | |
| Mean no. exons/gene | 102 | 9.9 | 10.2 | 8.7 | 10.3 | 12.2 | 11.5 | 11.4 | |
| No. of introns | 289,421 | 205,965 | 200,041 | 116,724 | 153,909 | 171,236 | 171,089 | 149,563 |
BUSCO parameters are C, complete genes; S, complete and single-copy genes; D, complete and duplicated genes; F, fragmented genes; M, missing genes.