Table 2.
RNA-Seq datasets used for gene annotation.
| Seq. technology | Library name | Reads mapped | Data access | Reference |
|---|---|---|---|---|
| Illumina PE150 | 0h_untreated_rep1 (spores) | 22,648,424 (93.92%) | GSE172187 | Dallaire et al. (2021) |
| 24h_exudate_rep1 (spores) | 25,766,642 (94.62%) | |||
| 48h_exudate_rep1 (spores) | 22,237,703 (93.65%) | |||
| Colonized maize | 1,093,801 (4.88%) | This study | ||
| Illumina PE75 | Spores2 | 28,053,926 (85.42%) | PRJNA722386 | Dallaire et al. (2021) |
| Spores3 | 45,435,299 (76.34%) | |||
| Myc2 (N. benthamiana) | 28,251,335 (11.97%) | |||
| Myc3 (N. benthamiana) | 23,216,161 (9.66%) | |||
| Nanopore | Spores (0 h untreated) | 5,003,748 (91.61%) | TBA | This study |
| Spores (48 h exudate) |