Table 1.
Statistics of sequencing data for Solanum rostratum genome assembly and annotation.
| Platform | Type | sample | Molecule | Total clean data | Coverage | Usage | SRA accession number |
|---|---|---|---|---|---|---|---|
| Illumina NovaSeq | PE | Leaf | DNA | 102.14 Gb | 113.69× | correction | SRR23354532 |
| PacBio HiFi | CCS | Leaf | DNA | 25.83 Gb | 28.75× | de novo assembly | SRR23354533 |
| Illumina Hi-C | PE | Leaf | DNA | 102.09 Gb | 113.63× | chromosome-level assembly | SRR23354531 |
| PacBio Iso-seq | Subreads | Mixed | RNA | 19.81 Gb | 22.05× | gene structure annotation | SRR23354525 |
| Illumina NovaSeq | PE | Root | RNA | 6.00 Gb | 6.90× | gene structure annotation | SRR23354529 |
| Illumina NovaSeq | PE | Stem | RNA | 7.14 Gb | 8.20× | gene structure annotation | SRR23354528 |
| Illumina NovaSeq | PE | Leaf | RNA | 6.93 Gb | 7.97× | gene structure annotation | SRR23354530 |
| Illumina NovaSeq | PE | Flower | RNA | 6.92 Gb | 7.96× | gene structure annotation | SRR23354527 |
| Illumina NovaSeq | PE | Fruit | RNA | 6.94 Gb | 7.98× | gene structure annotation | SRR23354526 |