Table 3.
Results of homology searches in BLASTn (NCBI) for sequencing of IS407-fliP PCR amplicons from Burkholderia mallei from tissue cultures and/or swabs of equids from different geographical regions of Brazil
| Isolate | Best hit | Id NCBI | Score | E-value | Identity | Gaps |
|---|---|---|---|---|---|---|
| Bahia, equine, male, spleen | Burkholderia mallei strain Turkey 10 chromosome 1, complete sequence | CP010348.1 | 952 | 0.0 | 515/515 (100%) | 0/515 (0%) |
| Bahia, equine, male, lung | Burkholderia mallei strain Turkey 10 chromosome 1, complete sequence | CP010348.1 | 952 | 0.0 | 518/519 (99%) | 1/519 (0%) |
| Bahia, equine, male, liver | Burkholderia mallei strain Turkey 10 chromosome 1, complete sequence | CP010348.1 | 970 | 0.0 | 524/524 (100%) | 0/524 (0%) |
| Bahia, equine, male, spleen | Burkholderia mallei strain Turkey 10 chromosome 1, complete sequence | CP010348.1 | 968 | 0.0 | 524/524 (100%) | 0/524 (0%) |
| Bahia, equine, female, tracheobronchial lymph node | Burkholderia mallei strain 2002734306 chromosome II, complete sequence | CP009708.1 | 518 | 4e-142 | 383/433 (88%) | 6/433 (1%) |
| Bahia, equine, female, liver | Burkholderia mallei strain Turkey 10 chromosome 1, complete sequence | CP010348.1 | 966 | 0.0 | 523/523 (100%) | 0/523 (0%) |
| Bahia, equine, female, nasal swab | Burkholderia mallei fliP pseudogene, partial sequence; and IS407A transposase (tnpB) gene, partial cds | MK440295.1 | 913 | 0.0 | 494/494 (100%) | 0/494 (0%) |
| Bahia, equine, female palate swab | Burkholderia mallei strain Turkey 10 chromosome 1, complete sequence | CP010348.1 | 963 | 0.0 | 521/521 (100%) | 0/521 (0%) |
| Segipe, mule, female, liver | Burkholderia mallei strain Turkey 10 chromosome 1, complete sequence | CP010348.1 | 970 | 0.0 | 525/525 (100%) | 0/525 (0%) |
| Piauí, equine, female, nasal swab | Burkholderia mallei strain Turkey 10 chromosome 1, complete sequence | CP010348.1 | 946 | 0.0 | 512/512 (100%) | 0/512 (0%) |
| Piauí, equine, female, pulmonary and mediastinal lymph nodes (pool) | Burkholderia mallei strain Turkey 10 clone 1-6.6 fliP mobile element, partial sequence | MK947141.1 | 785 | 0.0 | 425/425 (100%) | 0/425 (0%) |
| Maranhão, equine, female, pulmonary lymph node | Burkholderia mallei strain Turkey 10 chromosome 1, complete sequence | CP010348.1 | 966 | 0.0 | 523/523 (100%) | 0/523 (0%) |
| Tocantins, mule, female, liver | Burkholderia mallei strain Turkey 10 chromosome 1, complete sequence | CP010348.1 | 968 | 0.0 | 524/524 (100%) | 0/524 (0%) |
| Rio Grande do Sul, equine, female, nasal swab | Burkholderia mallei fliP pseudogene, partial sequence; and IS407A transposase (tnpB) gene, partial cds | MK440295.1 | 928 | 0.0 | 502/502 (100%) | 0/502 (0%) |
| Rio Grande do Sul, equine, male, mandibular lymph node | Burkholderia mallei strain Turkey 10 chromosome 1, complete sequence | CP010348.1 | 955 | 0.0 | 517/517 (100%) | 0/517 (0%) |
| Rio Grande do Sul, equine, male, spleen | Burkholderia mallei fliP pseudogene, partial sequence; and IS407A transposase (tnpB) gene, partial cds | MK440295.1 | 719 | 0.0 | 390/391 (99%) | 0/391 (0%) |
| Rio Grande do Sul, equine, male, liver | Burkholderia mallei fliP pseudogene, partial sequence; and IS407A transposase (tnpB) gene, partial cds | MK440295.1 | 928 | 0.0 | 502/502 (100%) | 0/502 (0%) |
| Rio Grande do Sul, equine, male, ethmoidal concha abscess | Burkholderia mallei strain Turkey 10 chromosome 1, complete sequence | CP010348.1 | 968 | 0.0 | 524/524 (100%) | 0/524 (0%) |
| Santa Catarina, equine, male, liver | Burkholderia mallei fliP pseudogene, partial sequence; and IS407A transposase (tnpB) gene, partial cds | MK440295.1 | 939 | 0.0 | 508/508/ (100%) | 0/508 (0%) |
| Santa Catarina, equine, male, spleen | Burkholderia mallei strain Turkey 10 clone 1-6.6 fliP mobile element, partial sequence | MK947141.1 | 678 | 0.0 | 376/380 (99%) | 1/380 (0%) |
| Santa Catarina, equine, female, lung | Burkholderia mallei fliP pseudogene, partial sequence; and IS407A transposase (tnpB) gene, partial cds | MK440295.1 | 920 | 0.0 | 498/498 (100%) | 0/498 (0%) |
| Mato Grosso, donkey, female, kidney | Burkholderia mallei strain Turkey 10 clone 1-6.6 fliP mobile element, partial sequence | MK947140.1 | 911 | 0.0 | 460/470 (98%) | 3/470 (0%) |
| Mato Grosso, donkey, female, palate | Burkholderia mallei fliP pseudogene, partial sequence; and IS407A transposase (tnpB) gene, partial cds | MK440295.1 | 922 | 0.0 | 499/499 (100%) | 0/499 (0%) |
| Mato Grosso, donkey, female, lung | Burkholderia mallei fliP pseudogene, partial sequence; and IS407A transposase (tnpB) gene, partial cds | MK440295.1 | 928 | 0.0 | 502/502 (100%) | 0/502 (0%) |
| Mato Grosso, asinine, female parotid lymph node | Burkholderia mallei fliP pseudogene, partial sequence; and IS407A transposase (tnpB) gene, partial cds | MK440295.1 | 929 | 0.0 | 503/503 (100%) | 0/503 (0%) |
| Mato Grosso, equine, female, bladder | Burkholderia mallei strain Turkey10 chromosome 1, complete sequence | C P010348.1 | 966 | 0.0 | 523/523 (100%) | 0/523 (0%) |
| Mato Grosso, equine, female, Left cranial, lobe lung | Burkholderia mallei strain Turkey10 chromosome 1, complete sequence | C P010348.1 | 957 | 0.0 | 518/518 (100%) | 0/518 (0%) |
| Amazonas, equine, female, lung | Burkholderia mallei strain Turkey10 chromosome 1, complete sequence | C P010348.1 | 970 | 0.0 | 525/525 (100%) | 0/525 (0%) |
| São Paulo, equine, female, tracheal secretion | Burkholderia mallei strain Turkey10 chromosome 1, complete sequence | C P010348.1 | 871 | 0.0 | 490/494 (99%) | 2/494(0%) |