Table 5.
A summary of most important MTAs recommended for MAS on the basis of present study
| MTA | Chr | Pos | Allele* | Description |
|---|---|---|---|---|
| M1955 | NA | NA | G/A* | Detected using CMLM: Associated with DTH and DTA with highest R2 (20%) |
| M5818 | 4D | 0.84 | A/G | Detected using FarmCPU: Associated with DTH, DTA and DTM |
| M3072 | 3A | 0.14 | T/G | Detected using FarmCPU: Associated with DTA and DTM (lowest p value after Bonferroni) |
| M12140 | 6B | 1.59 | G/T | Detected using FarmCPU: Associated with TGW and reported in previous study for TGW (Cui et al. 2013) |
| M2375 | 1A | 1.55 | C/T | Detected using mvLMM: Associated with DTM, GFD, PH and TNPP (stable across the 3 environments), and reported in previous study for GFD and TNPP (Wang et al. 2009) |
| M3080 | 1A | 4.3 | C/T | |
| M1396 | 1A | 1.57 | C/T | Detected using mvLMM: Associated with DTM, GFD, PH and TNPP, and reported in previous study for GFD (Wang et al. 2009) |
| M274 | 1A | 1.75 | C/T | Detected using mvLMM: Associated with DTM, GFD and PH, and reported in previous study for GFD (Wang et al. 2009) |
| M373 | 1A | 4.28 | T/G | |
| M6513 | 2B | 1.48 | A/G | Detected using epistasis: Associated with TGW and reported for TGW in previous study (Ramya et al. 2010; Chen et al. 2015) |
| M2913 | 7B | 1.40 | G/A |
Chr, chromosome; Pos, position (cM) and *: desirable allele