Table 1.
Summary of public data sources used in the study.
| Dataset_ID | Reference | Dataset_Type | Input Data | Cohort | Patient_Count | Cell_Count |
|---|---|---|---|---|---|---|
| GSE131907 | 25 | scRNAseq-10X | Raw UMI counts | LUAD | 58 | 208506 |
| GSE132465 | 26 | scRNAseq-10X | Raw UMI counts | COAD | 23 | 47285 |
| GSE176078 | 28 | scRNAseq-10X | Raw UMI counts | BRCA | 26 | 100064 |
| GSE176078 | 28 | Bulk RNAseq | Raw counts | BRCA | 24 | NA |
| GSE178341 | 33 | scRNAseq-10X | Raw UMI counts | COAD | 62a | 371223a |
| GSE85507 | 31 | Bulk Microarray | RMA normalized | Multi | 15 | NA |
| GSE85507 | 31 | In vitro Microarray | RMA normalized | Multi | 16 | NA |
| CCLE | 32 | In vitro RNAseq | Raw counts | Multi | 838 | NA |
| TCGA | 1 | Bulk RNAseq | Raw counts | Multi | 10079 | NA |
Note: Accession IDs, authors, references, weblinks, number of patients/samples, number of cells (if single-cell) and profiled cancer cohort(s), are included in the table.
a9 patient subset with RNAscope data is used.