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. 2023 May 9;99(6):fiad046. doi: 10.1093/femsec/fiad046

Table 3.

List of indicator OTUs associated with contrasting FI. Given are fungal and bacterial indicator OTUs that are positively associated (q < 0.05) with a FI level and also associated with all three FSs of the respective FI. The taxonomic assignment is provided at the lowest possible level and relative abundance across the entire dataset is given. Attributed lifestyles are determined based on rnn copy numbers (oligotrophy < 0.5, copiotroph ≥ 5) to the lowest possible taxonomic rank provided in the rnnDB. The fungal lifestyles of the two fOTUs remained unclassified using FUNGuild. Relative abundance is given in %.

Treatment association OTU Relative abundance Kingdom Phylum Class Order Family Genus q-value Associated lifestyle Mean rrn copies STDEV Entries in rrnDB
1.4 LU bOTU17 0.624 Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Rhodobiaceae
0.010 Oligotroph 1 0 2   
bOTU23 0.150 Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus 0.010 Copiotroph 10.31 2.4 798
bOTU6 0.088 Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus 0.010 Copiotroph 10.31 2.4 798
bOTU1379 0.036 Bacteria Actinobacteria Actinobacteria Micrococcales Promicromonosporaceae 0.013 Oligotroph 3.09 0.3 11
0.7 LU bOTU972 0.081 Bacteria Chloroflexi Chloroflexia Chloroflexales Roseiflexaceae Roseiflexus 0.034 Oligotroph 2 0 2
bOTU473 0.025 Bacteria Proteobacteria Deltaproteobacteria Desulfuromodales Geobacteraceae Geobacter 0.028 Oligotroph 2.64 0.93 14
bOTU2583 0.006 Bacteria Verrucomicrobia OPB35_soil_group    0.038 Oligotroph 2.49 0.84 41   
fOTU62 0.333 Fungi Ascomycota Dothideomycetes Pleosporales 0.044 Unlassified –    –   
fOTU82 0.216 Fungi Ascomycota Sordariomycetes Sordariales Chaetomiaceae 0.031 Unlassified –    –    –