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nPattern values and number of learned patterns for different CoGAPS runs. The values shown in boldface are used in further analysis.
| Sample | # genes | # spots | numPatterns (Learned Patterns) |
|---|---|---|---|
|
| |||
| PDAC metastatic lymph node | 18418 | 1351 | 5(5), 8(10), 15(21) |
| PanIN | 16,954 | 1,872 | 5(5), 10(10) |
| Invasive breast ductal carcinoma | 24228 | 4898 | 5(5), 10(9), 15(14), 20(16) |
| HCC | 20423 | 3006 | 5(4), 10(7), 15(9), 20(10), 30(18) |
