Table 2.

Summary and annotation of SNPs on a population-scale

a				b
Category		Number of SNPs		Category	Angara	New Zealand	Rex	Total
Total			24,831,754	Sample size	n = 6	n = 6	n = 6	n = 18
Upstream			156,603	Number of total SNPs	15,622,108	16,948,460	16,539,048	24,831,754
Exonic	Stop gain		607	Number of shared SNPs	12,234,559
	Stop loss		64
	Synonymous		103,686
	Nonsynonymous		57,721	‘Upstream’ refers to a variant that overlaps with the 1 kb region upstream of the gene start site ‘Stop gain’ means that a nsSNP leads to the creation of a stop codon at the variant site ‘Stop loss’ means that a nsSNP leads to the elimination of a stop codon at the variant site ‘Splicing’ means that a variant is within 2 bp of a splice junction ‘Downstream’ means that a variant overlaps with the 1 kb region downstream of the gene end site ‘Upstream/Downstream’ means that a variant is located in downstream and upstream regions (possibly for two different genes)
Intronic			6,751,084
Splicing			670
Downstream			148,646
Upstream/downstream			1729
Intergenic			17,610,944