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. 2023 Jun 1;24:123. doi: 10.1186/s13059-023-02960-7

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© The Author(s) 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 4 — Amplified gene families in corals vs sea anemones. A Average number of gene copies in corals vs sea anemones. Orthogroups colored in orange have significantly more gene copies in corals compared to sea anemones and orthogroups colored in blue have significantly less gene copies in corals compared to sea anemones (binomial test, adjusted p-value < 0.001). Dot sizes correspond to the ratio of TDG for each OG in 11 coral genomes. B Heatmap of gene copy numbers in 15 species for 192 OG amplified in corals and 28 OG amplified in sea anemones. The phylogenetic tree is the output of the OrthoFinder software. C Proportion of TDG in 192 OG amplified in corals (orange), 28 amplified in sea anemones (blue), and not amplified OG (gray). The pie charts represent the proportion of TDG among the OG amplified in corals or sea anemones, in Porites lobata (orange), Pocillopora cf. effusa (red) and in sea anemones (blue)