Table 4. Published ChIP-seq datasets used for ChromHMM.

Protein	Accession no.	Publication	Matched input
NIPBL (EtOH- and IAA-treated)	GSE104334	Rao et al., 2017	-
CBX1	GSM1010758	Gertz et al., 2013
EZH2	GSM3498250	Dunham et al., 2012	GSM2308475;GSM2308476
POLR2A	GSM935426	Dunham et al., 2012	GSM2308422
POLR2AphosphoS5	GSM803474	Gertz et al., 2013	GSM803475
SIN3A	GSM1010905	Gertz et al., 2013
YY1	GSM803354	Gertz et al., 2013	GSM803475
H3K4me1	GSM945858		GSM2308475; GSM2308476
H3K4me1	GSM2527549	Dunham et al., 2012	GSM2308422
H3K4me3	GSM2533929	Dunham et al., 2012	GSM2308475; GSM2308476
H3K4me3	GSM945304	Thurman et al., 2012	GSM945287
H3K9me3	GSM2527565	Dunham et al., 2012
H3K9me3	GSM2308431	Dunham et al., 2012
H3K27ac	GSM2534277	Dunham et al., 2012	GSM2308422
H3K27me3	GSM2308612	Dunham et al., 2012