Table 1.
Data collected and available for eleven fiber intervention studies.
Study Name | Repository for raw data | Accession number for raw data | Sequencing platform used | Single- or paired-end data | Processed data in this manuscript deposited to Figshare repository include |
---|---|---|---|---|---|
Baxter_2019_V435 | NCBI Sequence Read Archive | SRP128128 | Illumina MiSeq | paired | cleaned reads, metadata, OTU tables |
Dahl_2016_V1V236 | NCBI Sequence Read Archive | SRP403421 | Illumina MiSeq | paired | cleaned reads, metadata, OTU tables |
Deehan_2020_V5V62 | NCBI Sequence Read Archive | SRP219296 | Illumina MiSeq | paired | cleaned reads, metadata, OTU tables |
Healey_2018_V3V437 | NCBI Sequence Read Archive | SRP120250 | Illumina MiSeq | paired | cleaned reads, metadata, OTU tables |
Hooda_2012_V4V638 | NCBI Sequence Read Archive | SRP403421 | 454/Roche pyrosequencing | single | cleaned reads, metadata, OTU tables |
Kovatcheva_2015_V1V239 | NCBI Sequence Read Archive | SRP062889 | 454/Roche pyrosequencing | single | cleaned reads, metadata, OTU tables |
Liu_2017_V440 | European Nucleotide Archive | PRJEB15149 | Ion Torrent | single | cleaned reads, metadata, OTU tables |
Morales_2016_V3V441 | NCBI Sequence Read Archive | SRP403421 | Illumina MiSeq | paired | cleaned reads, metadata, OTU tables |
Rasmussen_2017_V1V342 | NCBI Sequence Read Archive | SRP106361 | 454/Roche pyrosequencing | single | cleaned reads, metadata, OTU tables |
Tap_2015_V3V443 | European Nucleotide Archive | PRJEB2165 | 454/Roche pyrosequencing | single | cleaned reads, metadata, OTU tables |
Venkataraman_2016_V444 | NCBI Sequence Read Archive | SRP067761 | Illumina MiSeq | paired | cleaned reads, metadata, OTU tables |