Table S4. List of up regulated genes in Panchvalkal exposed P. aeruginosa satisfying the dual criteria of log fold-change ≥2 and FDR≤0.01.
| No. | Feature ID/Gene | Codes for | log fold change | FDR |
|---|---|---|---|---|
| 1 | mexC | Membrane fusion protein, multidrug efflux system | 16.82 | 0 |
| 2 | PA2139 | Pseudogene | 15 | 0.01 |
| 3 | PA3441 | Molybdopterin-binding protein | 10 | 0.006 |
| 4 | PA5328 | Mono-heme cytochrome C | 8 | 0.01 |
| 5 | PA2161 | Hypothetical protein | 7.22 | 4.16E-06 |
| 6 | oprJ | Outer membrane protein, multidrug efflux system | 6.91 | 0 |
| 7 | PA3383 | Phosphonate transport system substrate-binding protein | 6.33 | 0.0006 |
| 8 | PA0700 | Hypothetical protein | 5.8 | 0.003 |
| 9 | PA2565 | Hypothetical protein | 5.74 | 0 |
| 10 | PA0909 | Hypothetical protein | 5.4 | 0.005 |
| 11 | napB | Cytochrome c-type protein | 5.26 | 1.12E-13 |
| 12 | PA2090 | Hypothetical protein | 5.11 | 0.0004 |
| 13 | hpcD | 5-carboxymethyl-2-hydroxymuconate isomerase | 4.8 | 0.01 |
| 14 | PA2285 | Hypothetical protein | 4.8 | 1.55E-05 |
| 15 | PA3566 | Hypothetical protein | 4.75 | 0.001 |
| 16 | PA0695 | Hypothetical protein | 4.42 | 0.005 |
| 17 | PA1107 | Diguanylate cyclase | 4.21 | 0 |
| 18 | mexD | Multidrug efflux pump | 4.15 | 0 |
| 19 | PA2364 | Type VI secretion system protein | 4.03 | 1.29E-12 |
| 20 | coaB | Phage coat protein B | 4 | 0.01 |
| 21 | PA3442 | Sulfonate transport system ATP-binding protein | 4 | 0.004 |
| 22 | PA4866 | Phosphinothricin acetyltransferase | 4 | 0.002 |
| 23 | PA1231 | Hypothetical protein | 3.93 | 0.0002 |
| 24 | PA4172 | Exodeoxyribonuclease III | 3.93 | 5.00E-07 |
| 25 | PA0640 | Bacteriophage protein | 3.55 | 1.84E-07 |
| 26 | PA2499 | Deaminase | 3.53 | 0.002 |
| 27 | PA1352 | Hypothetical protein | 3.51 | 1.34E-05 |
| 28 | ospR | Transcriptional regulator | 3.43 | 0 |
| 29 | cdhA | Carnitine 3-dehydrogenase | 3.42 | 0.002 |
| 30 | PA4908 | Ornithine cyclodeaminase | 3.31 | 1.18E-06 |
| 31 | PA5391 | Hypothetical protein | 3.21 | 0.0008 |
| 32 | PA2307 | NitT/TauT family transport system permease protein | 3.18 | 8.69E-05 |
| 33 | PA5135 | Hypothetical protein | 2.97 | 9.42E-06 |
| 34 | PA2933 | large subunit ribosomal protein L6 (rplF; 50S ribosomal protein L6) | 2.96 | 0.0004 |
| 35 | PA3235 | Hypothetical protein | 2.96 | 1.62E-10 |
| 36 | PA4290 | Methyl-accepting chemotaxis protein | 2.96 | 0 |
| 37 | PA0384 | Hypothetical protein | 2.92 | 0.01 |
| 38 | PA3287 | Hypothetical protein | 2.92 | 5.20E-14 |
| 39 | PA0848 | Peroxiredoxin (alkyl hydroperoxide reductase subunit C) | 2.9 | 2.08E-09 |
| 40 | PA1021 | enoyl-CoA hydratase | 2.88 | 0.0007 |
| 41 | PA2916 | Hypothetical protein | 2.86 | 0.009 |
| 42 | PA0638 | Bacteriophage protein | 2.84 | 8.11E-06 |
| 43 | PA0633 | Hypothetical protein | 2.84 | 1.29E-10 |
| 44 | msuE | FMN reductase | 2.75 | 0.01 |
| 45 | PA0623 | Bacteriophage protein | 2.74 | 9.84E-08 |
| 46 | soxG | Sarcosine oxidase | 2.73 | 0.002 |
| 47 | PA0814 | Hypothetical protein | 2.71 | 0.01 |
| 48 | PA2666 | 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase | 2.7 | 0.009 |
| 49 | PA3431 | Hypothetical protein | 2.7 | 0.009 |
| 50 | PA5431 | GntR family transcriptional regulator | 2.67 | 1.41E-08 |
| 51 | PA0941 | Hypothetical protein | 2.66 | 0.01 |
| 52 | PA3757 | GntR family transcriptional regulator | 2.64 | 0.01 |
| 53 | PA2679 | Hypothetical protein | 2.61 | 0 |
| 54 | PA1343 | Bacteriophage protein | 2.59 | 1.03E-08 |
| 55 | mraY | Phospho-N-acetylmuramoyl-pentapeptide-transferase | 2.59 | 1.92E-10 |
| 56 | PA0622 | Bacteriophage protein | 2.59 | 3.12E-11 |
| 57 | PA0185 | Sulfonate transport system permease protein | 2.55 | 1.45E-06 |
| 58 | PA1260 | Polar amino acid transport system substrate-binding protein | 2.5 | 0.01 |
| 59 | PA4596 | Transcriptional regulator | 2.5 | 3.21E-09 |
| 60 | PA3606 | DTW domain-containing protein | 2.47 | 0.0001 |
| 61 | PA1977 | Hypothetical protein | 2.47 | 1.73E-05 |
| 62 | hutU | Urocanate hydratase | 2.46 | 0 |
| 63 | mdcC | Malonate decarboxylase delta subunit | 2.45 | 0.009 |
| 64 | hasD | ATP-binding cassette, subfamily C, bacterial exporter for protease/lipase | 2.45 | 5.11E-08 |
| 65 | gloA2 | Lactoylglutathione lyase | 2.44 | 0.01 |
| 66 | betT1 | Choline/glycine/proline betaine transport protein | 2.44 | 0.0009 |
| 67 | pslK | Polysaccharide biosynthesis protein PslK | 2.44 | 2.46E-05 |
| 68 | PA2122 | Hypothetical protein | 2.43 | 0.0002 |
| 69 | ahpC | Peroxiredoxin (alkyl hydroperoxide reductase subunit C) | 2.43 | 0 |
| 70 | PA3412 | Hypothetical protein | 2.42 | 0.01 |
| 71 | PA3938 | Taurine transport system substrate-binding protein | 2.41 | 0.002 |
| 72 | PA1038 | Hypothetical protein | 2.4 | 0.005 |
| 73 | PA1958 | Nicotinamide mononucleotide transporter | 2.39 | 0.0004 |
| 74 | PA5377 | Glycine betaine/proline transport system permease protein | 2.39 | 0.0002 |
| 75 | PA4093 | Hypothetical protein | 2.37 | 0.009 |
| 76 | PA1518 | 5-hydroxyisourate hydrolase | 2.36 | 0.01 |
| 77 | ureD | Urease accessory protein | 2.35 | 0.003 |
| 78 | PA0118 | Hypothetical protein | 2.33 | 0.01 |
| 79 | mtlD | Mannitol 2-dehydrogenase | 2.32 | 0.01 |
| 80 | PA5033 | Hypothetical protein | 2.32 | 0.001 |
| 81 | PA3453 | Hypothetical protein | 2.32 | 1.43E-07 |
| 82 | PA2352 | Glycerophosphoryl diester phosphodiesterase | 2.3 | 0.0008 |
| 83 | PA3534 | Oxidoreductase | 2.3 | 1.04E-06 |
| 84 | PA0962 | Starvation-inducible DNA-binding protein | 2.28 | 4.83E-09 |
| 85 | hcnA | Hydrogen cyanide synthase | 2.27 | 0.01 |
| 86 | mobA | Molybdenum cofactor guanylyltransferase | 2.27 | 0.01 |
| 87 | PA2111 | Hypothetical protein | 2.26 | 6.66E-16 |
| 88 | PA1922 | Outer membrane receptor for ferrienterochelin and colicins | 2.25 | 0.01 |
| 89 | PA4790 | S-adenosylmethionine-dependent methyltransferase | 2.25 | 0.006 |
| 90 | PA0647 | Hypothetical protein | 2.25 | 0.001 |
| 91 | PA4578 | Hypothetical protein | 2.25 | 6.67E-08 |
| 92 | PA4280.5 | 16S ribosomal RNA | 2.25 | 0 |
| 93 | acsA | Acetyl-CoA synthetase | 2.24 | 0 |
| 94 | PA4508 | Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein | 2.22 | 0.002 |
| 95 | PA0098 | 3-oxoacyl-[acyl-carrier-protein] synthase I | 2.21 | 0.003 |
| 96 | PA4651 | Fimbrial chaperone protein | 2.19 | 0.001 |
| 97 | xcpT | Type II secretion system protein G | 2.17 | 0.002 |
| 98 | PA2555 | Acetyl-CoA synthetase | 2.17 | 8.88E-16 |
| 99 | PA0817 | Hypothetical protein | 2.16 | 0.01 |
| 100 | PA2375 | Hypothetical protein | 2.15 | 0.003 |
| 101 | masA | Enolase-phosphatase E1 | 2.15 | 2.30E-11 |
| 102 | PA2826 | Glutathione peroxidase | 2.14 | 1.89E-07 |
| 103 | PA5445 | Succinyl-CoA:acetate CoA-transferas | 2.13 | 4.02E-09 |
| 104 | PA0630 | Hypothetical protein | 2.11 | 0.009 |
| 105 | panD | Aspartate 1-decarboxylase | 2.1 | 0.006 |
| 106 | PA0557 | Hypothetical protein | 2.1 | 0.0009 |
| 107 | cyoA | Cytochrome o ubiquinol oxidase subunit II | 2.09 | 0.003 |
| 108 | PA0306 | Transcriptional regulator | 2.07 | 3.45E-05 |
| 109 | oprH | oprH; PhoP/Q and low Mg2+ inducible outer membrane protein H1 | 2.06 | 0 |
| 110 | PA2293 | Hypothetical protein | 2.05 | 0.007 |
| 111 | PA3694 | Hypothetical protein | 2.05 | 0.007 |
| 112 | PA3294 | Type VI secretion system secreted protein VgrG | 2.05 | 0.0002 |
| 113 | rpmD | Large subunit ribosomal protein L30 | 2.05 | 4.80E-09 |
| 114 | PA3289 | Hypothetical protein | 2.04 | 0.0009 |
| 115 | PA5539 | GTP cyclohydrolase I | 2.03 | 0.01 |
| 116 | PA0864 | Transcriptional regulator | 2.03 | 0.01 |
| 117 | PA3420 | Transcriptional regulator | 2.03 | 2.15E-06 |
| 118 | PA3568 | Propionyl-CoA synthetase | 2.03 | 2.01E-09 |
| 119 | ampDh3 | N-acetylmuramoyl-L-alanine amidase | 2.02 | 0.008 |
| 120 | PA3332 | Hypothetical protein | 2 | 0.01 |
| 121 | PA3882 | Hypothetical protein | 2 | 0.006 |
| 122 | PA4824 | Hypothetical protein | 2 | 0.002 |
| 123 | PA4612 | Hypothetical protein | 2 | 4.55E-07 |
Genes are arranged in decreasing order of Fold Change.