Table 1.

Dataset metadata

Abbreviation	Technology	GEO	Reference	Samples	Cell sorting	SC/SN	Dissociation	Genes per cell or nuclei	Counts per cell or nuclei	Reads (Mill.)	% of pseudoaligned reads	Available annotations
Wu18	Dropseq, 10X, DroNcSeq	GSE119531	11	4	WT	SN, SC	Mechanical	805	1482	55	76	Yes
Miao21	10X	GSE157079	14	4	WT	SC	Enzymatic	1175	2822	152	75	Yes
Park18	10X	GSE107585	8	35	WT	SC	Enzymatic	657	1374	745	76	Yes
Kirita20	10X	GSE139107	9	4	WT	SN	Mechanical	1032	1862	1481	85	Yes
Dumas20	10X	E-MTAB-8145	13	3	C, G, M	SC	Enzymatic	1229	2072	462	59	Noa
Conway20	10X	GSE140023	12	1	WT	SC	Enzymatic + Mechanical	842	2027	343	83	No
Hinze21	Drop-seq, 10X	GSE145690	10	7	IM, OM, C, WT	SC	Mechanical	711	1419	177	80	No
Janosevic21	10X	GSE151658	15	1	WT	SC	Enzymatic + Mechanical	1608	4100	407	77	Nob

10X: 10X Genomics, SC: single-cell, SN: single-nuclei, WT: Whole Tissue, C: Cortex, G: Glomerulus, M: Medulla, IM: Inner Medulla, OM: Outer Medulla.

^aAnnotations were not available in the manuscript or its supplemental information, but a manual annotation based on reported markers was performed.

^bAnnotations were not available in the manuscript or its supplemental information, but annotations were retrieved from: https://github.com/hato-lab/kidney-endotoxin-sepsis-timeline-featureplot/blob/master/app.R.