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. 2023 Jun 3;14:3235. doi: 10.1038/s41467-023-38867-x

Table 1.

Spike mutations detected in the sequenced cases

Patient Sex Age range Days from P1 first positive specimen GenBank Accession number Source Lineage Mutations in Spike relative to earliest sample (BA.1: A67V, T95I, Y145D, L212I, G339D, S371L, S373P, S375F, K417N, N440K, G446S, S477N, T478K, E484 A, Q493R, G496S, Q498R, N501Y, Y505H, T547K, D614G, H655Y, N679K, P681H, N764K, D796Y, N856K, Q954H, N969K, L981F)
E96 L176 S254 R346 S371 V445 N448 L455 F456 K458 S477 E484 T547 S680 P681 A688 L981 S982
P1 M 61–65 0 N/A This study
23 ON220548 This study BA.1 A H V F
40 ON220539 This study BA.1 T M V H V F
48 ON196014 This study BA.1.23 T M V H V F
64 ON193425 This study BA.1.23 F T M V Y V F
72 ON220529 This study BA.1.23 D T W M V H V F
81 ON220571 This study BA.1.23+ F T W M D V Y V F
P2 F 66–70 76 ON220533 This study BA.1.23 D T W M V A H V F
P3 M 36–40 101 ON934538 This study BA.1.23 D T W M V R V F
111 ON934577 This study BA.1.23 D T W M V R V F
114 ON934030 This study BA.1.23 D T W M V R V F
130 ON934607 This study BA.1.23+ D T F W M V R V F
147 n.s.* This study BA.1.23 D T W M V R V F
192 n.s.* This study BA.1.23+ D T F W M V R V F
209 n.s.* This study BA.1.23+ D T F W M V R V F
213 n.s.* This study BA.1.23 D T W M V R V F
218 n.s.* This study BA.1.23+ D T F W M V R V F
232 n.s.* This study BA.1.23+ D F T F S W L V R V L
245 n.s.* This study BA.1.23+ D T F D W L N V R V L
255 n.s.* This study BA.1.23+ D T F S W L N V R V L
266 n.s.* This study BA.1.23+ D T F W L N V R V F
P4 F 61–65 104 n.s.* This study BA.1.23+ D T F W M V K R V F
111 ON854465 This study BA.1.23 D T W M V R V F
125 ON619382 This study BA.1.23+ D T A W M V R V F
132 n.s.* This study BA.1.23+ D T W L M V R V F
S1 F 81–85 78 ON118042 Howard et al. 2022. GenBank BA.1.23 D T W M V R V
S2 F 26–30 79 ON139241 Howard et al. 2022. GenBank BA.1.23 D T W M V R V

*n.s. Consensus not submitted due to presence of >10 intrahost single nucleotide variants. N/A: not sequenced.

#Mutations in bold correspond to changes at positions already mutated in BA.1.