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. 2023 Jun 3;14:3217. doi: 10.1038/s41467-023-39031-1

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© The Author(s) 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 7 — a, b Box-whisker plots of residue coverage percentage (a) and sequence match percentage (b) for the models built by phenix.map_to_model for the deposited, DeepEMhancer-processed, phenix.auto_sharpen-processed and EMReady-processed maps on the test set of n = 682 individual chains. c, d Box-whisker plots of residue coverage percentage (c) and sequence match percentage (d) for the models built by MAINMAST for the deposited, DeepEMhancer-processed, phenix.auto_sharpen-processed and EMReady-processed maps on the test set of n = 385 individual protein chains. For the box-whisker plots, the center line is the median, the cross is the mean, lower and upper hinges represent the first and third quartile, the whiskers stretch to 1.5 times the interquartile range from the corresponding hinge, and the outliers are plotted as diamonds. The dashed lines represent the mean values of deposited maps. Source data are provided as a Source Data file.