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. 2023 Jun 5;24:233. doi: 10.1186/s12859-023-05354-5

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© The Author(s) 2023, corrected publication 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 5 — Distributions of protein conformations generated by DPL for the complex of Sucrose-phosphatase and α-D-glucose. The PDB-registered holo structure is shown in light gray (PDB ID: 1U2S), the apo structure is shown in dark gray (PDB ID: 1S2O), and the generated structure is shown in blue. A Generated structure closest to the holo structure. B Best L-rms generated structure. C Generated structure closest to the apo structure. D Distributions of the generated protein conformations projected onto the two-dimensional plane of TM-score to apo and TM-score to holo (blue symbols). The conformations obtained with DPL+S are also shown (orange symbols)