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. 2023 May 23;13:1178736. doi: 10.3389/fcimb.2023.1178736

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Copyright © 2023 Luu, Kasimov, Phillips, Myers and Jelocnik

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Phylogenomic relationships of C trachomatis and C psittaci reference strains. Midpoint-rooted maximum-likelihood (ML) core-genome phylogenetic trees constructed using Parsnp version 1.2 of (A) 13 aligned publicly available complete C trachomatis genomes; and (B) 18 aligned publicly available complete C psittaci genomes. For C trachomatis, genome sequences are coloured according to tissue tropism/known genotypes (as depicted in the figure legend). For C psittaci, genome sequences are coloured according to their respective host (as depicted in the figure legend). Corresponding host silhouettes are shown adjacent to sequence names. Bootstrap values greater than 0.8 are shown. Branch lengths represent the nucleotide substitutions per site, as indicated by the scale bar.