REAGENT or RESOURCE	SOURCE	IDENTIFIER
Deposited data
Intestinal enterocytes single-cell RNA-sequencing	Moor et al. 201812	GEO: GSE109413
Colon fibroblast Slide-seq	Avraham-Davidi et al. 202224	https://singlecell.broadinstitute.org/single_cell/study/SCP2038
CellTalkDB ligand-receptor list	Shao et al. 202131	http://tcm.zju.edu.cn/celltalkdb
Colon fibroblast single-cell RNA-sequencing	Muhl et al. 202028	GEO: GSE150294
Human lung fibroblasts and macrophages single-cell RNA-sequencing	Adams et al. 202033	GEO: GSE136831
Data files used in this paper	This paper	https://zenodo.org/record/7569404#.ZBwyr-xByWB
Software and algorithms
Sanity	Breda, Zavolan, and van Nimwegen 202146	https://github.com/jmbreda/Sanity
ParTI	Hart et al. 20157	https://github.com/AlonLabWIS/ParTI
IGraphM	Horvat et al. 202247	http://szhorvat.net/pelican/igraphm-a-mathematica-interface-for-igraph.html
TACCO	Mages et al. 202329	https://github.com/simonwm/tacco
Resource website for the Mathematica code	This paper	https://github.com/miriadler/pareto_interactions
Resource website for the Python code	This paper	https://github.com/nitzanlab/pareto_interactions_py