Antibodies |
|
19.7E |
Robinson et al., 2016 |
Patent WO2018106712A1 |
12.1F |
Robinson et al., 2016 |
Patent WO2018106712A1 |
25.10C |
Robinson et al., 2016 |
Patent WO2018106712A1 |
37.7H |
Robinson et al., 2016 |
Patent WO2018106712A1 |
S370.7 |
This study |
N/A |
StrepMAB-Classic Oyster 645 conjugate |
IBA Lifesciences |
Cat# 2-1555-050 |
Cy3 conjugated goat-anti-human |
Jackson Immuno Research |
Cat# 109-165-008; RRID: AB_2337720
|
Totalseq-C Anti-Human Hashtag #1 |
Biolegend |
Cat# 394661; RRID: AB_2801031
|
Totalseq-C Anti-Human Hashtag #2 |
Biolegend |
Cat# 394663; RRID: AB_2801032
|
Totalseq-C Anti-Human Hashtag #3 |
Biolegend |
Cat# 394665; RRID: 2801033 |
Totalseq-C Anti-Human Hashtag #4 |
Biolegend |
Cat# 394667; RRID: 2801034 |
APC-Cy7 Mouse Anti-Human CD3 |
BD Biosciences |
Cat# 557757; RRID: AB_396863
|
APC-Cy7 Mouse Anti-Human CD4 |
Biolegend |
Cat# 317418; RRID: AB_571947
|
APC-Cy7 Mouse Anti-Human CD8 |
BD Biosciences |
Cat# 557760; RRID: AB_396865
|
APC-H7 Mouse Anti-Human CD14 |
BD Biosciences |
Cat# 561384; RRID: AB_10611720
|
PerCP-Cy5.5 Mouse Anti-Human CD19 |
Biolegend |
Cat# 302230; RRID: AB_2073119
|
|
Bacterial and Virus Strains |
|
NEB 5-alpha Competent E. coli (High Efficiency) |
New England Biolabs |
Cat# C2987H |
Lassa virus (Josiah strain) |
Brouwer et al., 2022 |
N/A |
|
Biological Samples |
|
Convalescent patient serum |
Robinson et al., 2016 |
N/A |
|
Chemicals, Peptides, and Recombinant Proteins |
|
Tween20 |
Sigma-Aldrich |
Cat# P1379-500ML |
Bovine Serum Albumin (fraction V) |
Thermo Scientific |
Cat# 9048-46-8 |
Penicillin |
Sigma-Aldrich |
Cat# P3032-10MI |
Streptomycin |
VWR |
Cat# 382-EU-100G |
Iodacetamide |
Sigma-Aldrich |
Cat# I1149 |
BioLock solution |
IBA Lifesciences |
Cat# 2-0205-050 |
PBS |
Thermo Scientific |
Cat# 10010023 |
TBS |
Alfa Aesar |
Cat# J60764.K2 |
PEI MAX |
Polysciences |
Cat# 24765-1 |
Uranyl Formate |
Electron Microscopy Sciences |
Cat #D310 25 GM |
Fluorinated octyl maltoside |
Anatrace |
Part# O310F |
Imidazole |
Sigma-Aldrich |
Cat# I5513 |
Papain from papaya latex |
Sigma-Aldrich |
SKU# P4762 |
Acetonitrile, 80%, 20% Water with 0.1% Formic Acid, Optima LC/MS |
Fisher Scientific |
Cat# 15431423 |
Water with 0.1% Formic Acid (v/v), Optima™ LC/MS Grade |
Fisher Scientific |
Cat# LS118-212 |
Acetonitrile |
Fisher Scientific |
Cat# 10489553 |
Trifluoroacetic acid |
Fisher Scientific |
Cat# 10155347 |
Dithiothreitol |
Sigma-Aldrich |
Cat# 43819 |
Mass spectrometry grade trypsin |
Promega |
Cat# V5280 |
Sequencing grade chymotrypsin |
Promega |
Cat# V1061 |
α-Lytic Protease |
New England Biolabs |
Cat# P8113L |
Urea |
Sigma-Aldrich |
U5378-1KG |
Fugene |
Promega |
Cat# E5911 |
DEAE-dextran |
Sigma-Aldrich |
Cat# D9885 |
Saquinavir |
NIH-ARP |
Cat# 4658 |
Reporter Lysis buffer |
Promega |
Cat# E3971 |
Fetal Bovine Serum |
Omega Scientific, Inc. |
FB-02 |
RPMI 1640 |
Corning |
15-040-CV |
Trypan Blue |
Sigma-Aldrich |
T8154-100ML |
Ethanol |
Pharmaco |
111000200 |
FectoPRO |
Polyplus Transfection |
101000019 |
Citric acid |
Fisher Scientific |
BP339-500 |
Tris Base |
Sigma-Aldrich |
T1503-5KG |
|
Critical Commercial Assays |
|
Bright-Glo Luciferase Assay System |
Promega |
Cat# E2620 |
|
Deposited Data |
|
3D map of LIV GPC-I53-50A (strain Josiah) |
This study |
EMDB: EMD-28178 |
3D model of LIV GPC-I53-50A (strain Josiah) |
This study |
PDB: 8EJD
|
3D map of LII GPC-I53-50A (strain NIG08-A41) |
This study |
EMDB: EMD-28179 |
3D model of LII GPC-I53-50A (strain NIG08-A41) |
This study |
PDB: 8EJE
|
3D map of LV GPC-I53-50A (strain Soromba-R) |
This study |
EMDB: EMD-28180 |
3D model of LV GPC-I53-50A (strain Soromba-R) |
This study |
PDB: 8EJF
|
3D map of LVII GPC-I53-50A (strain Soromba-R) |
This study |
EMDB: EMD-28181 |
3D model of LVII GPC-I53-50A (strain Soromba-R) |
This study |
PDB: 8EJG
|
3D map of LIV GPC-I53-50A (strain Josiah_ bound to 12.1F Fab |
This study |
EMDB: EMD-28182 |
3D model of LIV GPC-I53-50A (strain Josiah_ bound to 12.1F Fab |
This study |
PDB: 8EJH
|
3D map of LIV GPC-I53-50A (strain Josiah_ bound to 19.7E Fab |
This study |
EMDB: EMD-28183 |
3D model of LIV GPC-I53-50A (strain Josiah_ bound to 19.7E Fab |
This study |
PDB: 8EJI
|
3D map of LIV GPC-I53-50A (strain Josiah_ bound to S370.7 Fab |
This study |
EMDB: EMD-28184 |
3D model of LIV GPC-I53-50A (strain Josiah_ bound to S370.7 Fab |
This study |
PDB: 8EJJ
|
Mass spectrometry data |
This study |
ftp://massive.ucsd.edu/MSV000091003/ |
S370.7 HC sequence |
This study |
GenBank: OQ451467
|
S370.7 LC sequence |
This study |
GenBank: OQ451468
|
|
Experimental Models: Cell Lines |
|
FreeStyle 293F cells |
Thermo Scientific |
Cat# R79007
|
HEK 293T cells |
ATCC |
Cat# CRL-11268 |
Expi293T cells |
ATCC |
CRL-3216 |
TZM-bl cells |
NIH ARRRP |
Cat# 8129 |
|
Experimental Models: Organisms/Strains |
|
Recombinant DNA |
|
GPCysR4(Josiah)-StreptagII pPPI4 plasmid |
Brouwer et al., 2022 |
N/A |
GPCysR4(Josiah)-I53-50A.1NT1-Strep-tagII pPPI4 plasmid |
Brouwer et al., 2022 |
N/A |
GPCysR4(NIG08-A41)-I53-50A.1NT1-Strep-tagII pPPI4 plasmid |
This study |
N/A |
GPCysR4(Soromba-R)-I53-50A.1NT1-Strep-tagII pPPI4 plasmid |
This study |
N/A |
GPCysR4(Togo)-I53-50A.1NT1-Strep-tagII pPPI4 plasmid |
This study |
N/A |
GPCysR4(Josiah)-I53-50A.1NT1-Avi-His pPPI4 plasmid |
Brouwer et al., 2022 |
N/A |
GPCysR4(NIG08-A41)-I53-50A.1NT1-Avi-His pPPI4 plasmid |
Brouwer et al., 2022 |
N/A |
GPCysR4(Soromba-R)-I53-50A.1NT1-Avi-His pPPI4 plasmid |
This study |
N/A |
GPCysR4(Togo)-I53-50A.1NT1-Avi-His pPPI4 plasmid |
This study |
N/A |
GPCysR4(Soromba-R_D114N)-I53-50A.1NT1-StrepTagII pPPI4 plasmid |
This study |
N/A |
Furin pPPI4 plasmid |
Brouwer et al., 2019 |
N/A |
S1P pcDNA3.0 plasmid |
This study |
N/A |
GPCysRRLL(Josiah)-I53-50A.1NT1-Strep-tagII pPPI4 plasmid |
This study |
N/A |
Fc-tagged LAMP-1 ectodomain |
Jae et al., 2014 |
N/A |
GPC(NIG08-A41)_full-length pPPI4 plasmid |
Brouwer et al., 2022 |
N/A |
GPC(Josiah)_full-length pPPI4 plasmid |
Brouwer et al., 2022 |
N/A |
GPC(CSF)_full-length pPPI4 plasmid |
Brouwer et al., 2022 |
N/A |
19.7E HC, 19.7E LC, 12.1F HC, 12.1F LC, 25.10C HC, 25.10C LC, 37.7H HC, 37.7H LC gene fragments |
Integrated DNA Technologies |
N/A |
S370.7 HC and LC gene fragments |
This study |
N/A |
|
Software and Algorithms |
|
GraphPad Prism v8 |
GraphPad |
N/A |
UCSF Chimera |
Pettersen et al., 2004 |
N/A |
UCSF ChimeraX |
Goddard et al., 2018 |
N/A |
cryoSPARC.v3 |
Punjani et al., 2017 |
N/A |
Leginon |
Suloway et al., 2005 |
N/A |
MotionCor2 |
Zheng et al., 2017 |
N/A |
GCTF |
Zhang, 2016 |
N/A |
Relion/3.0 and 3.1 |
Zivanov et al., 2018 |
N/A |
ABodyBuilder |
Leem et al., 2016 |
N/A |
Coot |
Casañal et al., 2020 |
N/A |
Phenix |
Liebschner, et al., 2019 |
N/A |
EMRinger |
Barad et al., 2015 |
N/A |
MolProbity |
Williams et al., 2018 |
N/A |
Appion |
Lander et al., 2009 |
N/A |
Epitope-Analyzer |
Montiel-Garcia, et al., 2022 |
N/A |
PDBePISA |
Krissinel et al., 2007 |
N/A |
Privateer |
Agirre et al., 2015 |
N/A |
Byos™ (Version 4.0) |
Protein Metrics Inc. |
N/A |
XCalibur Version v4.2 |
Thermo Fisher |
N/A |
Orbitrap Fusion Tune application v3.1 |
Thermo Fisher |
N/A |
Cellranger 6.0.2 |
10X Genomics |
N/A |
ab[x] toolkit |
Briney et al., 2018 |
N/A |
Single Cell Analysis of B cells (SCAB) |
Hurtado et al., 2022 |
N/A |
GenePix Pro 7 software v7.2.29.2 |
Molecular Devices |
N/A |
|
Other |
|
PstI-HF |
New England Biolabs |
Cat# R3140S |
BamHI-HF |
New England Biolabs |
Cat# R3136S |
NotI-HF |
New England Biolabs |
Cat# R3189 |
Q5 Site-directed mutagenesis kit |
New England Biolabs |
Cat# E0554S |
T4 DNA ligase |
New England Biolabs |
Cat# M0202 |
Quick ligation kit |
New England Biolabs |
Cat# M2200 |
Superdex200 10/300GL Column |
GE Healthcare Life Sciences |
Cat# 28990944 |
Protein G resin |
Cytiva |
Cat# 17061802 |
CaptureSelect IgG-Fc resin |
Thermo Scientific |
Cat# 2942852010 |
Ni-NTA agarose |
QIAGEN |
Cat# 30210 |
Amicon® Ultra-4 Centrifugal Filter Unit (100 kDA MWCO) |
Millipore Sigma |
SKU# UFC810024 |
Amicon® Ultra-4 Centrifugal Filter Unit (30 kDA MWCO) |
Millipore Sigma |
SKU# UFC803024 |
Amicon® Ultra-4 Centrifugal Filter Unit (10 kDA MWCO) |
Millipore Sigma |
SKU# UFC801024 |
Amicon Ultra-0.5 Centrifugal Filter Unit (100 kDa MWCO) |
Millipore Sigma |
SKU# UFC5100BK |
Amicon Ultra-0.5 Centrifugal Filter Unit (30 kDa MWCO) |
Millipore Sigma |
SKU # UFC5030BK |
Amicon Ultra-0.5 Centrifugal Filter Unit (10 kDA MWCO) |
Millipore Sigma |
SKU# UFC5010BK |
Prometheus NT.Plex nanoDSF Grade High Sensitivity Capillary Chips |
Nanotemper |
Cat# PR-AC006 |
400-mesh copper grids |
Electron Microscopy Sciences |
Cat# 0400-Cu |
Octet Red96 system |
Sartorius (FortéBio) |
N/A |
Octet Biosensors: Streptavidin (SA) |
Sartorius (FortéBio) |
Cat# 18-5019 |
Octet Biosensors: Anti-Human Fc Capture (AHC) |
Sartorius (FortéBio) |
Cat# 18-5060 |
FreeStyle 293 Expression medium |
Thermo Scientific |
Cat# 12338018 |
OptiMEM |
Gibco |
Cat# 31985-070 |
DMEM |
Gibco |
Cat# 21969-035 |
Fetal calf serum |
Gibco |
Cat# 10270/106 |
BioLock |
IBA Lifesciences |
Cat# 2-0205-250 |
BXT Buffer (10X) |
IBA Lifesciences |
Cat# 2-1042-025 |
Steritop Filter Units |
Merck Millipore |
Cat# C3239 |
Greiner CELLSTAR® 96 well plates round bottom clear wells |
Merck Millipore |
Cat# M9436 |
Totalseq-C0951 PE-Streptavidin |
Biolegend |
Cat# 405183 |
Totalseq-C0992 PE-Streptavidin |
Biolegend |
Cat# 405181 |
Totalseq-C0994 PE-Streptavidin |
Biolegend |
Cat# 405177 |
Totalseq-C0956 APC-Streptavidin |
Biolegend |
Cat# 405261 |
Totalseq-C0958 APC-Streptavidin |
Biolegend |
Cat# 405293 |
Totalseq-C0971 Streptavidin |
Biolegend |
Cat# 405271 |
Totalseq-C0972 Streptavidin |
Biolegend |
Cat# 405273 |
Totalseq-C0973 Streptavidin |
Biolegend |
Cat# 405275 |
LIVE/DEAD Fixable Aqua Dead Cell Stain Kit |
Thermo Scientific |
Cat# L34966
|
Biotinylated Human Serum Albumin Protein |
Acro Biosystems |
Cat# HSA-H82E3 |
Chromium Next GEM Chip K Single Cell Kit |
10X Genomics |
PN# 1000287 |
Chromium Single Cell V(D)J Amplification Kit, Human BCR |
10X Genomics |
PN# 1000255 |
Chromium 5’ Feature Barcode Kit |
10X Genomics |
PN# 1000256 |
Chromium Next GEM Single Cell 5’ Gel Bead Kit v3 |
10X Genomics |
PN# 1000264 |
Chromium Next GEM Single Cell 5’ Library Construction Kit |
10X Genomics |
PN# 1000190 |
96-well Skirted PCR plates White Barcoded |
Bio-Rad |
Cat# HSP9901 |
FACSMelody Cell sorter |
BD Biosciences |
N/A |
Chromium Controller |
10X Genomics |
N/A |
NEBuilder HiFi DNA Assembly Master Mix |
New England Biolabs |
E2621X |
NovaSeq 6000 Sequencing System |
Illumina |
N/A |
NovaSeq 6000 S4 Reagent Kit v1.5 |
Illumina |
20028313 |
NovaSeq 6000 S2 Reagent Kit v1.5 |
Illumina |
20028316 |
NovaSeq 6000 S1 Reagent Kit v1.5 |
Illumina |
20028319 |
NovaSeq 6000 SP Reagent Kit v1.5 |
Illumina |
20028401 |
Glomax reader |
Turner BioSystems |
Model# 9101-002 |
UltrAuFoil R 1.2/1.3 grids (300-mesh) |
Quantifoil Micro Tools GmbH |
N/A |
Strep-TactinXT Superflow high capacity resin |
IBA Life Sciences |
Cat# 2-4010-010 |
NanoDrop 2000C |
Thermo Scientific |
Cat# ND-2000C |
Prometheus NT.48 NanoDSF |
NanoTemper Technologies |
N/A |
Leica DMi1 Inverted Microscope |
Leica Microsystems |
N/A |
Tecnai F20 electron microscope |
FEI |
N/A |
TemCam F415 CMOS camera |
TVIPS |
N/A |
Vitrobot mark IV |
Thermo Scientific |
N/A |
Solarus 950 plasma system |
Gatan |
N/A |
PELCO easiGlow |
Ted Pella Inc. |
N/A |
Talos Arctica |
Thermo Scientific |
|
FEI Titan Krios |
Thermo Scientific |
N/A |
K2 Summit direct electron detector camera |
Gatan |
N/A |
C18 ZipTip |
Merck Milipore |
Cat# ZTC18S008 |
Vivaspin 500, 3 kDa MWCO, Polyethersulfone |
Sigma-Aldrich |
Cat# GE28-9322-18 |
Orbitrap Eclipse mass spectrometer |
Thermo Fisher Scientific |
N/A |
Ultimate 3000 HPLC |
Thermo Fisher Scientific |
N/A |
EasySpray PepMap RSLC C18 column (75 μm x 75 cm) |
Thermo Fisher Scientific |
Cat# ES805 |
PepMap 100 C18 3μM 75μM x 2cm |
Thermo Fisher Scientific |
Cat# 164946 |
NEXTERION Slide H NHS-ester activated glass slides |
Schott Inc. |
SKU:1070936 |
sciFLEXARRAYER S3 non-contact microarray |
Scienion Inc. |
N/A |
Scienion PDC80 nozzle |
Scienion Inc. |
N/A |
GenePix 4000B microarray scanner |
Molecular Devices |
N/A |