Table 3. Tyrosine Phosphorylation, Oxidation, and Tyrosine Oxidation with Phosphorylation in Phosphoproteomics Data by Variable Modification Search.

						number of modified residues
reference	ProteomeXchange data set (PXD) or MassIVE (MSV) IDa	sample type	research topic	raw files	identified peptide sequences	Ox-Y	p-Y	pOx-Y
Hoffman et al.25	PXD001543	patient samples: skeletal muscle	exercise	28	24 975	141	151	7
Kohtala et al.26		in vivo: mouse hippocampus	isoflurane anesthesia	6	7400	17	10	7
Lin et al.27	PXD017045	in vivo: mouse kidney	sepsis-induced kidney injury	18	10 240	19	2	4
Rahikainen et al.28		in vitro: mouse embryonic fibroblast cell line	cell adhesion signaling	12	9780	45	9	7
Sharma et al.1	PXD000612	in vitro: HeLa S3 cervical cancer cell line	phosphoproteomics method development and comparison of S, T, and Y phosphorylation	141	60 471	471	802	51
Tighe et al.29	MSV000083012a	in vivo: mouse lung	radiation-induced pulmonary fibrosis	18	4204	15	6	4

^aThe ProteomeXchange identifier of one data set could not be found.