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. 2023 Mar 16;32(12):2103–2116. doi: 10.1093/hmg/ddad043

Table 2.

Genetic variants associated with cervical cancer in a total of 8624 cases and 400 573 controls of European ancestry (EstBB, FinnGen, UKBB+Kaiser Permanente) and 9229 cervical cancer cases and 490 304 controls in the multi-ancestry meta-analysis (EstBB, FinnGen, UKBB+Kaiser Permanente and Biobank Japan)

Variant (EA) chr:pos (b37) P-value European ancestry meta-analysis P-value multi-ancestry meta-analysis OR (95% CI) European ancestry meta-analysis OR (95% CI) Biobank Japan dataset EAF Eur EAF Biobank
Japan
Nearest genea
rs2268177 (T) 1:22415410 3.8 Inline graphic 10−8 3.1 Inline graphic 10−8 1.12 (1.07–1.16) 1.13 (1.01–1.27) 0.18 0.54 CDC42
rs4849177 (C) 2:113982584 1.3 Inline graphic 10−15 9.4 Inline graphic 10−15 0.87 (0.85–0.91) 0.95 (0.84–1.07) 0.39 0.35 PAX8
rs27069 (T) 5:1347128 6.1Inline graphic 10−15 1.3 Inline graphic 10−14 0.88 (0.85–0.91) 0.83 (0.71–0.97) 0.43 0.14 CLPTM1L
rs35508382 (G)b 6:32593144 8.4 Inline graphic 10−40 1.0 Inline graphic 10−39 0.67 (0.63–0.71) 0.82 (0.70–0.97) 0.10 0.14 HLA-DQA1
rs12603332 (C) 17:38082807 1.6 Inline graphic 10−10 1.2 Inline graphic 10−9 0.90 (0.88–0.93) 0.96 (0.85–1.09) 0.49 0.72 ORMDL3

aNearest gene based on Open Targets Genetics portal.

bFor European ancestry analysis, we detected on chr6 HLA-region lead signal as rs28718232, P = 2.55 Inline graphic 10−44, but it was not a lead signal in the Biobank Japan dataset and therefore we present the common variant rs35508382 for both meta-analyses.