Table 1:

Autoencoder architecture for RNA (center) and ATAC (right).

Encoder
Batchnorm (26717)	Encoder
Linear (26717, 1000)	Batchnorm (61744)
Batchnorm (1000)	Linear (61744, 1000)
LeakyReLU (0.2)	Batchnorm (1000)
Linear(1000, 1000)	LeakyReLU (0.2)
Batchnorm (1000)	Linear(1000, 1000)
LeakyReLU (0.2)	Batchnorm (1000)
Linear(1000, 64)	LeakyReLU (0.2)
Decoder	Linear (1000, 64)
Linear (64, 500)	Decoder
Batchnorm (500)	Linear (64, 500)
LeakyReLU (0.2)	Batchnorm (500)
Linear (500, 1000)	LeakyReLU (0.2)
Batchnorm (1000)	Linear (500, 1000)
LeakyReLU (0.2)	Batchnorm (1000)
Linear(1000, 26717)	LeakyReLU (0.2)
Batchnorm (26717)	Linear(1000, 61744)
Multiply by α and add μ