Table 2.
Association variants identified for all ROP samples with p <5×10−6.
| Chr | Pos | Effect Allele | AF | rsq | OR | p-value | p-value adj for BW & GA | gene | eQTL p-value |
|---|---|---|---|---|---|---|---|---|---|
| 7 | 42226712 | T | 0.06 | 0.96 | 1.27 | 5.25E-08 | 4.96E-09* | GLI3 | NA |
| 7 | 90141855 | G | 0.17 | 0.91 | 1.16 | 5.84E-08 | 1.71E-07 | CLDN12 | >0.05 |
| 16 | 90048889 | T | 0.22 | 0.81 | 1.13 | 9.67E-07 | 4.50E-07 | DEF8. TUBB3 | 2.7E-04 |
| 13 | 36559030 | A | 0.14 | 0.68 | 1.14 | 7.90E-06 | 6.50E-07 | DCLK1 | 0.02 |
| 7 | 21465569 | T | 0.06 | 0.89 | 1.21 | 3.51E-05 | 8.38E-07 | SP4 | 0.01 |
| 13 | 111811973 | G | 0.09 | 0.87 | 1.17 | 8.70E-06 | 1.83E-06 | ARHGEF7 | >0.05 |
| 9 | 8800078 | G | 0.36 | 0.93 | 1.10 | 1.40E-06 | 2.14E-06 | PTPRD | 7.7E-03 |
| 2 | 162937083 | A | 0.12 | 0.96 | 1.14 | 1.13E-06 | 3.56E-06 | DPP4 | >0.05 |
| 8 | 99105726 | C | 0.39 | 0.84 | 1.09 | 6.04E-05 | 3.77E-06 | ERICH5. RPL30. RIDA | 1.90E-21 |
| 6 | 3980472 | A | 0.08 | 0.93 | 1.17 | 9.37E-04 | 5.52E-06 | PRPF4B | >0.05 |