Table 5.

ON- and LN-specific consensus QTLs associated with at least two traits and ON&LN constitutive consensus QTLs associated with at least three traits

		Consensus QTL				Significant QTL and stable QTL
Chro.a		N treatment	Position (cM)	CIb (cM)		Position (cM)	CI (cM)
A2	cqA2a	LNc	29.9	28.7–31.0	qSNLN3–A2c	29.4	27.8–30.4
					qPNLN1–A2a	31.6	27.8–32.9
	cqA2b	ON&LN	42.6	40.6–44.6	qPNLN1–A2b	41.0	32.9–44.3
					qPHON1–A2a	42.0	39.8–45.2
					qSWLN1–A2a	44.4	37.8–45.2
	cqA2c	ONd	48	47.1–49.0	qPHON1–A2b	47.2	45.4–52.8
					sqSNON–A2	48.1	47.1–49.1
	cqA2g	LN	77.6	76.2–78.8	qSYLN2–A2a	76.0	75.6–79.9
					qSWLN2–A2a	76.5	75.1–80.1
					qSNLN2–A2	80.1	77.5–82.0
	cqA2h	ON&LN	83	82.3–83.7	sqSWLN–A2a	81.4	80.1–82.7
					sqSWON–A2	82.9	81.0–84.9
					qSYON1–A2b	83.0	82.0–85.0
					qSNON2–A2a	84.0	82.0–86.0
					sqSYLN–A2	84.8	83.3–86.4
A3	cqA3a	ON	3.3	0.0–8.3	qPHON2–A3a	20.4	0.6–27.8
					qBNON1–A3	0.6	0.0–10.8
	cqA3d	ON&LN	59.4	59.1–59.7	sqSWLN–A3	58.4	57.6–59.3
					qPHLN1–A3b	59.4	58.8–59.5
					qSYLN1–A3a	59.5	58.9–62.7
					qPHON1–A3b	62.7	58.8–65.6
	cqA3e	LN	65.6	65.2–66.0	qSNLN1–A3a	65.5	62.7–66.5
					qPHLN1–A3c	65.6	65.5–66.3
	cqA3h	ON&LN	76.7	76.0–77.4	qSYLN1–A3c	76.7	75.4–76.9
					qSWON3–A3a	76.9	75.4–81.0
					qSNLN1–A3b	76.4	75.4–80.0
					qSWLN1–A3a	76.4	73.8–84.0
	cqA3i	ON&LN	84.9	84.4–85.5	qSYON2–A3a	81.6	81.0–84.3
					sqPNLN–A3	83.5	82.0–84.9
					qSWLN1–A3b	85.7	84.0–85.7
					qSNON3–A3a	86.3	84.7–87.2
	cqA3j	ON&LN	92	91.2–92.9	qSYON2–A3b	92.0	87.2–92.8
					qSYLN2–A3a	92.0	88.7–92.8
					qSNON3–A3b	91.8	87.2–93.1
					qPNLN2–A3b	92.0	86.6–92.1
					qBNON3–A3	84.7	84.3–91.5
					qPNLN1–A3c	92.8	92.3–94.6
	cqA3k	ON&LN	97.5	96.8–98.3	qSYON3–A3c	95.7	92.8–100.9
					qSNLN3–A3a	95.7	95.3–97.5
					sqPNON–A3	97.7	96.3–99.0
	cqA3l	LN	101.8	100.6–103.1	qPNLN2–A3c	100.9	99.7–102.2
					qPHLN1–A3e	104.7	100.0–108.8
					qSNLN3–A3b	100.9	100.0–104.7
					sqSYLN–A3	102.6	100.5–104.7
A4	cqA4d	ON&LN	31	30.4–31.7	qSWLN1–A4a	31.0	30.4–35.8
					qPNLN1–A4a	31.0	30.4–31.7
					qSYON1–A4	31.7	31.0–38.6
	cqA4e	LN	39.3	37.1–41.6	qPNLN1–A4b	37.0	31.7–42.8
					qSWLN1–A4b	39.8	37.4–42.4
A5	cqA5c	ON&LN	54.5	52.9–56.0	qSYLN2–A5	53.3	50.6–55.0
					qPHLN2–A5	53.5	53.3–63.6
					qPNON2–A5	56.0	54.3–59.0
A8	cqA8	ON&LN	69.9	68.0–71.8	qPHON3–A8	76.6	68.5–79.3
					qBNLN2–A8	68.0	66.0–70.9
					qSNLN2–A8b	70.9	68.0–74.9
A9	cqA9a	ON	15.6	10.9–20.4	qBNON1–A9b	10.8	6.6–19.8
					qSNON1–A9a	20.8	8.6–22.3
	cqA9c	LN	37.2	36.0–38.4	qSWLN1–A9	29.9	28.9–38.0
					sqSNLN–A9	37.4	35.3–39.5
					qBNLN1–A9	38.0	35.2–38.4
C8	cqC8b	ON&LN	18.7	15.5–22.0	qPNLN2–C8	9.3	1.9–26.1
					sqSYON–C8	15.3	10.7–19.9
					qSNLN1–C8a	24.2	15.2–28.5
					qSYLN1–C8a	25.0	15.2–30.7
C9	cqC9b	ON&LN	102.2	98.5–105.9	qBNLN1–C9a	102.9	93.4–105.3
					qSNON1–C9c	101.7	93.7–103.1
					qSYON3–C9a	107.2	107.1–109.5
C9	cqC9c	ON&LN	122.42	117.8–127.0	sqBNLN–C9	114.6	110.6–118.6
					sqBNON–C9	116.7	108.1–125.3
					qSYON3–C9b	117.3	113.3–130.5
					qPNON3–C9	118.3	113.5–130.8
					sqSYLN–C9	124.6	117.0–132.1
					sqPNLN–C9	125.8	116.4–135.2

^aChro., chromosome; ^bCI, confidence interval; ^cLN, low nitrogen; ^dON, optimal nitrogen