Table 3.
Consistency of SNP alleles between the GBTS data with 40K markers and resequencing data with a sequence depth of 10× among 15 soybean accessions
| Soybean accession | Number of loci | Consistency rate | ||
|---|---|---|---|---|
| Consistent | Inconsistent | Not available | ||
| PI407222 | 40837 | 296 | 408 | 99.28% |
| PI507600 | 40744 | 239 | 558 | 99.42% |
| ZYD02878 | 39499 | 1802 | 240 | 95.64% |
| ZYD03247 | 40919 | 286 | 336 | 99.31% |
| ZYD04569 | 39978 | 1031 | 532 | 97.49% |
| HJ117 | 41183 | 241 | 117 | 99.42% |
| Hobbit | 41314 | 126 | 101 | 99.70% |
| JD12 | 40932 | 535 | 74 | 98.71% |
| JD17 | 40767 | 697 | 77 | 98.32% |
| Qihuang34 | 41238 | 236 | 67 | 99.43% |
| Suinong14 | 40941 | 160 | 440 | 99.61% |
| Xudou16 | 41247 | 189 | 105 | 99.54% |
| Zheng196 | 41223 | 214 | 104 | 99.48% |
| Zhonghuang13 | 40484 | 834 | 223 | 97.98% |
| Zhonghuang42 | 41291 | 204 | 46 | 99.51% |