Table 3.
Mapping summary and methylation on C and CpG sites
| ID | Raw reads num | Clean reads num | Mapping rate (%) | C ≥ 5 × depth | C ≥ 5 × coverage% | CG ≥ 5 × depth | CG ≥ 5 × coverage% |
|---|---|---|---|---|---|---|---|
| S1 Ca | 70610280 | 69541152 | 90.53% | 18.4549 | 4.27607 | 20.4197 | 12.3206 |
| S1 Control | 76774544 | 75846068 | 89.03% | 19.5327 | 3.98545 | 21.4912 | 11.708 |
| S2 Ca | 76406862 | 75205782 | 91.56% | 19.0952 | 4.40915 | 20.8279 | 12.7017 |
| S2 Control | 67661438 | 66824480 | 89.38% | 17.7763 | 4.07378 | 18.9796 | 11.6961 |
| S3 Ca | 82224792 | 81161958 | 88.79% | 22.1614 | 4.01877 | 24.2684 | 11.6027 |
| S3 Control | 55061390 | 54403478 | 90.96% | 15.5052 | 3.73298 | 17.209 | 10.9062 |
| S4Ca | 67110006 | 66372658 | 89.84% | 18.1324 | 4.13492 | 19.5161 | 11.8676 |
| S4 Control | 65713336 | 65097216 | 88.51% | 18.0754 | 3.89858 | 19.6942 | 11.1201 |
| S5 Ca | 67174320 | 66413802 | 88.91% | 17.8816 | 3.99566 | 19.0881 | 11.5049 |
| S5 Control | 59854658 | 59189972 | 91.14% | 15.9668 | 3.60568 | 17.5145 | 10.6602 |
| S6 Ca | 68838368 | 68250584 | 87.99% | 16.1532 | 3.91016 | 17.1773 | 11.034 |
| S6 Control | 67896208 | 67240612 | 90.41% | 16.5562 | 4.04057 | 17.7704 | 11.6787 |
| S7 Ca | 60636066 | 60021972 | 88.80% | 12.2743 | 2.70006 | 14.0251 | 7.91118 |
| S7 Control | 72072566 | 71210874 | 92.96% | 18.4785 | 4.55952 | 20.6071 | 13.0421 |
| S8 Ca | 72406728 | 71885174 | 87.35% | 20.4828 | 3.90657 | 21.2554 | 11.0308 |
| S8 Control | 71739188 | 71032094 | 88.84% | 17.2208 | 4.07385 | 18.8854 | 11.8001 |
| S9 Ca | 73334944 | 72588248 | 88.39% | 19.6719 | 4.29837 | 21.1938 | 12.1539 |
| S9 Control | 65025156 | 64526486 | 90.12% | 14.7728 | 3.00057 | 16.7971 | 8.49893 |
| S10 Ca | 64097306 | 63440050 | 88.85% | 16.7965 | 3.60493 | 18.5089 | 10.0266 |
| S10 Control | 89006670 | 87925188 | 91.26% | 20.0768 | 4.50314 | 23.8406 | 12.9384 |