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. 2023 May 26;14:1158028. doi: 10.3389/fgene.2023.1158028

TABLE 1.

Detailed information on 15 SNPs of TRP channels and glutamatergic synapse genes.

No. SNPs Chr Position Gene Region A1 A2 MAF HWE References
1 rs11110359 12 100774548 SLC17A8 synon_exon2 G A 0.138 0.101 Tag SNP
2 rs11568537 12 100813976 SLC17A8 A C 0.180 0.083 Tag SNP
3 rs2229900 6 34008006 GRM4 synon_exon8 A G 0.435 0.030 Tag SNP
4 rs2227283 6 102503317 GRIK2 synon_exon15 G A/T 0.347 0.404 Tag SNP
5 rs3761555 X 122316437 GRIA3 upstream T C 0.349 0.000 Formicola et al. (2010) Maher et al. (2013) Fang et al. (2015)
  6 rs3745521 19 51170706 SHANK1 nonsynon_exon22 A G 0.456 0.270 Tag SNP
  7 rs3020047 11 70935766 SHANK2 5′-UTR_exon1 T C 0.127 1.000 Tag SNP
  8 rs55678639 11 70316391 SHANK2 3′-UTR_exon23 A G 0.203 0.138 Tag SNP
  9 rs8065080 17 3480447 TRPV1 nonsynon_exon13 T C 0.394 0.616 Yakubova et al. (2021)
  10 rs222741 17 3508880 TRPV1 intron2 G A 0.193 0.270 Carreño et al. (2012)
  11 rs7217270 17 3421475 TRPV3 intron15 A G 0.063 0.254 Carreño et al. (2012)
  12 rs3742037 12 110226379 TRPV4 synon_exon13 G A 0.181 0.492 Tag SNP
  13 rs17862920 2 234827995 TRPM8 intron1 C T 0.250 0.927 Gavva et al. (2019)
  14 rs10166942 2 234825093 near TRPM8 upstream T C 0.355 0.549 Chen et al. (2018) Siokas et al. (2022)
  15 rs7577262 2 234818869 TRPM8 upstream G A 0.373 0.941 Chasman et al. (2014) Fu et al. (2019)

Abbreviations: Chr, Chromosome; A1, major allele; A2, minor allele; MAF, minor allele frequency; HWE, hardy weinberg equilibrium.