TABLE 1.
Detailed information on 15 SNPs of TRP channels and glutamatergic synapse genes.
| No. | SNPs | Chr | Position | Gene | Region | A1 | A2 | MAF | HWE | References |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | rs11110359 | 12 | 100774548 | SLC17A8 | synon_exon2 | G | A | 0.138 | 0.101 | Tag SNP |
| 2 | rs11568537 | 12 | 100813976 | SLC17A8 | — | A | C | 0.180 | 0.083 | Tag SNP |
| 3 | rs2229900 | 6 | 34008006 | GRM4 | synon_exon8 | A | G | 0.435 | 0.030 | Tag SNP |
| 4 | rs2227283 | 6 | 102503317 | GRIK2 | synon_exon15 | G | A/T | 0.347 | 0.404 | Tag SNP |
| 5 | rs3761555 | X | 122316437 | GRIA3 | upstream | T | C | 0.349 | 0.000 | Formicola et al. (2010) Maher et al. (2013) Fang et al. (2015) |
| 6 | rs3745521 | 19 | 51170706 | SHANK1 | nonsynon_exon22 | A | G | 0.456 | 0.270 | Tag SNP |
| 7 | rs3020047 | 11 | 70935766 | SHANK2 | 5′-UTR_exon1 | T | C | 0.127 | 1.000 | Tag SNP |
| 8 | rs55678639 | 11 | 70316391 | SHANK2 | 3′-UTR_exon23 | A | G | 0.203 | 0.138 | Tag SNP |
| 9 | rs8065080 | 17 | 3480447 | TRPV1 | nonsynon_exon13 | T | C | 0.394 | 0.616 | Yakubova et al. (2021) |
| 10 | rs222741 | 17 | 3508880 | TRPV1 | intron2 | G | A | 0.193 | 0.270 | Carreño et al. (2012) |
| 11 | rs7217270 | 17 | 3421475 | TRPV3 | intron15 | A | G | 0.063 | 0.254 | Carreño et al. (2012) |
| 12 | rs3742037 | 12 | 110226379 | TRPV4 | synon_exon13 | G | A | 0.181 | 0.492 | Tag SNP |
| 13 | rs17862920 | 2 | 234827995 | TRPM8 | intron1 | C | T | 0.250 | 0.927 | Gavva et al. (2019) |
| 14 | rs10166942 | 2 | 234825093 | near TRPM8 | upstream | T | C | 0.355 | 0.549 | Chen et al. (2018) Siokas et al. (2022) |
| 15 | rs7577262 | 2 | 234818869 | TRPM8 | upstream | G | A | 0.373 | 0.941 | Chasman et al. (2014) Fu et al. (2019) |
Abbreviations: Chr, Chromosome; A1, major allele; A2, minor allele; MAF, minor allele frequency; HWE, hardy weinberg equilibrium.