Table 2. Dissociation Constants (Kd) Measured by Titration Series of [15N,1H]-HSQC with Increasing Ligand Concentrations and 200 μM PIN1a.
compound | Kd T154 (mM) | Kd A124 (mM) | polarization ratio | T1ρ decay ratio | STD |
---|---|---|---|---|---|
1 | 1.5 | 3.6 | 0.42 | 0.67 | + |
13 | 1.7 | 4.5 | 0.38 | 0.45 | + |
10 | 8.4* | 11.8* | 0.38 | 0.90 | – |
11 | 5.4* | 8.8* | 0.53 | 0.92 | – |
3 | 12* | 8.6* | 0.75 | 0.98 | – |
The Kds were obtained from fitting with eq 6 in the CcpNMR software 3.0.40 Fitting curves are provided in Figure S7. The values annotated with * could not be fitted to a maximum and therefore should be considered with caution. The proposed Kds are most likely to be higher than these values. The polarization ratios were calculated according to eq 6 and showed a trend with low values for higher affinities, with the exception of compound 10, which shows a low polarization ratio despite a low affinity. The T1ρ decay ratio and the saturation transfer difference (STD) were measured for samples containing 200 μM ligand (L) and 200 μM ligand with 20 μM protein (PL). The T1ρ decay ratio was calculated with the formula (Γ400ms/Γ10ms)PL/(Γ400ms/Γ10ms)L. The observation of ligand signals in the STD NMR spectra detects a protein–ligand interaction; (+) the absence of a signal fails to detect protein–ligand interaction (−). Figure S8 provides examples of spectra for high (compound 1) and low (compound 11) T1ρ decay ratios and the positive STD spectrum for compound 1.