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. 2023 May 25;145(22):12066–12080. doi: 10.1021/jacs.3c01392

Table 2. Dissociation Constants (Kd) Measured by Titration Series of [15N,1H]-HSQC with Increasing Ligand Concentrations and 200 μM PIN1a.

compound Kd T154 (mM) Kd A124 (mM) polarization ratio T decay ratio STD
1 1.5 3.6 0.42 0.67 +
13 1.7 4.5 0.38 0.45 +
10 8.4* 11.8* 0.38 0.90
11 5.4* 8.8* 0.53 0.92
3 12* 8.6* 0.75 0.98
a

The Kds were obtained from fitting with eq 6 in the CcpNMR software 3.0.40 Fitting curves are provided in Figure S7. The values annotated with * could not be fitted to a maximum and therefore should be considered with caution. The proposed Kds are most likely to be higher than these values. The polarization ratios were calculated according to eq 6 and showed a trend with low values for higher affinities, with the exception of compound 10, which shows a low polarization ratio despite a low affinity. The T decay ratio and the saturation transfer difference (STD) were measured for samples containing 200 μM ligand (L) and 200 μM ligand with 20 μM protein (PL). The T decay ratio was calculated with the formula (Γ400ms10ms)PL/(Γ400ms10ms)L. The observation of ligand signals in the STD NMR spectra detects a protein–ligand interaction; (+) the absence of a signal fails to detect protein–ligand interaction (−). Figure S8 provides examples of spectra for high (compound 1) and low (compound 11) T decay ratios and the positive STD spectrum for compound 1.