Table 2. Branch migration during a yeast DNA extraction protocol using SDS.
Treatmenta | Branch migration (%)b | |
---|---|---|
No addition | + Co3+(NH3)6Cl–3c | |
Spheroplasting | 85 | 0 |
SDS lysis | 85 | 68 |
Phenol:chloroform | 73 | 50 |
Chloroform | 0 | n.d. |
Isopropanol | 0 | 0 |
Ethanol | 0 | 0 |
n.d., not determined.
aAnnealed substrates were aliquoted into the following: spheroplasting buffer or SDS lysis buffer, and incubated at 37°C for 30 min; TNM buffer, and extracted with phenol:chloroform or chloroform; 0.3 M sodium acetate, and precipitated using isopropanol or ethanol.
bBranch migration using 300 bp substrates S1 and S2 was measured as in Figure 2.
cSolutions were supplemented with 10 mM Co3+(NH3)6Cl–3 as indicated. Phenol, but not chloroform, was equilibrated with buffer containing 10 mM Co3+(NH3)6Cl–3.