Table 1.
Individual | Variant | Translation impact | Variant type | Inheritance | ACMG |
---|---|---|---|---|---|
1 | c.2051_2052dup | p.(Glu685*) | Nonsense | De novo | P |
2 | c.2107G>T | p.(Glu703*) | Nonsense | De novo | P |
3 | c.3034C>T | p.(Gln1012*) | Nonsense | De novo | P |
4 | c.4279C>T | p.(Gln1427*) | Nonsense† | De novo | LP |
5 | c.65del | p.(Gly22Valfs*7) | Frameshift | n/a* | LP |
6 | c.1099_1103dup | p.(Glu369Serfs*25) | Frameshift | Paternal | LP |
7 | c.1646_1650del | p.(Ile549Argfs*6) | Frameshift | De novo | P |
8 | c.2164_2167del | p.(Lsy722Valfs*17) | Frameshift | De novo | P |
9 | c.2714dup | p.(Met906Tyrfs*15) | Frameshift | De novo | P |
10 | c.4829dup | p.(Leu1610Phefs*259) | Frameshift† | De novo | LP |
11 | c.5054dup | p.(Pro1686Serfs*183) | Frameshift† | De novo | LP |
12 | c.183_186+2del | p.? | Splice | De novo | LP |
13 | c.264A>G | p.? | Splice | De novo | LP |
14 | c.768+1G>A | p.? | Splice | Paternal | LP |
15 | c.768+1G>A | p.? | Splice | Paternal | LP |
16 | c.2848-2A>C | p.? | Splice | n/a* | LP |
17 | arr(hg19)7q22.3 (104,696,686–105,407,628) x1 | p.? | Gross deletion | De novo | P |
18 | arr(hg19)7q22.3 (104,730,300–104,791,108) x1 | p.? | Gross deletion | De novo | P |
The mother was tested negative, the father not available for testing.
Variant predicted to escape NMD.
ACMG, American College of Medical Genetics and Genomics classification; LP, likely pathogenic; NMD, nonsense-mediated decay; P, pathogenic.