Table 2. Sequences quality and reads mapping of different samples.
| Samples | Clean reads | Q30% | GC% | Mapped reads | Unique mapped reads |
|---|---|---|---|---|---|
| LPS1 | 38,126,744 | 94.29% | 50.65% | 36,008,258 (94.44%) | 34,901,177 (91.54%) |
| LPS2 | 35,203,444 | 93.77% | 50.41% | 33,152,407 (94.17%) | 31,547,155 (89.61%) |
| LPS3 | 34,923,253 | 94.05% | 49.92% | 32,860,710 (94.09%) | 31,834,282 (91.15%) |
| CLPS1 | 30,683,298 | 94.05% | 49.73% | 28,896,011 (94.18%) | 27,837,621 (90.73%) |
| CLPS2 | 33,420,602 | 94.43% | 50.11% | 31,682,117 (94.80%) | 30,692,212 (91.84%) |
| CLPS3 | 31,530,842 | 94.47% | 50.23% | 29,882,067 (94.77%) | 28,985,826 (91.93%) |
| PolyIC1 | 32,413,772 | 94.56% | 50.62% | 30,796,719 (95.01%) | 29,890,039 (92.21%) |
| PolyIC2 | 26,512,197 | 94.6% | 51.07% | 24,992,758 (94.27%) | 24,153,693 (91.10%) |
| PolyIC3 | 36,393,528 | 94.18% | 50.92% | 34,436,214 (94.62%) | 33,286,709 (91.46%) |
| CPolyIC1 | 30,683,298 | 94.05% | 49.73% | 29,116,185 (94.86%) | 28,272,727 (92.12%) |
| CPolyIC2 | 33,420,602 | 94.43% | 50.11% | 27,466,988 (94.85%) | 26,540,968 (91.65%) |
| CPolyIC3 | 31,530,842 | 94.47% | 50.23% | 27,094,064 (95.05%) | 26,144,517 (91.71%) |
Notes.
- LPS1-3
- LPS treatment group
- CLPS1-3
- Control group of LPS treatment
- PolyIC1-3
- ploy(I:C) treatment group
- CPolyIC1-3
- Control group of ploy(I:C) treatment